Evidence map›Paper›PMID 35657435›Full record

ArticleArchives of virology2022

Complete genome sequence of a novel virus belonging to the genus Badnavirus in jujube (Ziziphus jujuba Mill.) in China.

Baojun Liu, Guoxin Zhang, Danbo Song, Quan Wang, Hong Li, Aixing Gu, Jianyu Bai

Abstract read
PubMed Publisher
In one paragraph

Article in Archives of virology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Emerging and Re-Emerging Diseases Caused by Badnaviruses.Pathogens (Basel, Switzerland) · 2023
    Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 2 institutions in 1 country.

Baojun Liu *College of Agriculture, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China.
Guoxin Zhang *College of Agriculture, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China.
Danbo SongCollege of Agriculture, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China.
Quan WangCollege of Agriculture, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China.
Hong LiInstitute of Economic Forestry, Xinjiang Academy of Forestry Sciences, Urumqi, 830063, China. 1900284827@qq.com.
Aixing GuCollege of Agriculture, Xinjiang Agricultural University, Urumqi, 830052, Xinjiang, China. 594903711@qq.com.
Jianyu BaiInstitute of Economic Forestry, Xinjiang Academy of Forestry Sciences, Urumqi, 830063, China. bjyhao2010@sina.com.ORCID http://orcid.org/0000-0002-9172-0702
Xinjiang Agricultural University · CNXinjiang Academy of Forestry · CN

Funding

Research and Demonstration of Key Technologies for Blockade Prevention and Control of Jujube Virus Diseases in Xinjiang 2018E02026
6 · The paper itself

Abstract

The genome sequence of a novel circular DNA virus related to members of the genus Badnavirus was identified in diseased jujube trees by high-throughput sequencing and verified by conventional Sanger sequencing of cloned PCR products. The name "jujube badnavirus WS" (JuBWS) is proposed for this virus. Diseased jujube leaves showed yellow mosaic and malformation symptoms, with round chlorotic spots found on diseased fruit. The genome of this virus has a length of 6450 nt and has a typical badnavirus genomic structure with three open reading frames (ORFs). JuBWS was identified as a novel badnavirus based on nucleotide differences in the RNase (RT + RNase H) coding region of ORF3. The JuBWS sequence showed 70.48-76.41% nucleotide sequence identity to other known badnaviruses, thus meeting the taxonomic criterion for establishing a new species within the genus Badnavirus. This study suggested that the novel badnavirus might be a pathogen associated with jujube mosaic disease, and this will be investigated in the future.

Indexed as

BadnavirusZiziphusFruitGenome, ViralHigh-Throughput Nucleotide SequencingOpen Reading FramesPhylogeny

Identifiers

PMID35657435
OpenAlexW4281733053

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.