Evidence map›Paper›PMID 35658030›Full record

ArticleScience advances2022

Concordance of hydrogen peroxide-induced 8-oxo-guanine patterns with two cancer mutation signatures of upper GI tract tumors.

Seung-Gi Jin, Yingying Meng, Jennifer Johnson, Piroska E Szabó, Gerd P Pfeifer

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
3.0field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. 8-Oxoguanine: A Lesion, an Epigenetic Mark, or a Molecular Signal?International journal of molecular sciences · 2025
    Review
  6. Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. Article
  12. Article
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  14. Review
  15. Review
  16. Article
  17. Article
  18. DNA Damage and Parkinson's Disease.International journal of molecular sciences · 2024
    Review
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Seung-Gi JinDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0001-5041-0559
Yingying MengDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.
Jennifer JohnsonDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.
Piroska E SzabóDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0001-9314-7009
Gerd P PfeiferDepartment of Epigenetics, Van Andel Institute, Grand Rapids, MI 49503, USA.ORCID 0000-0002-5080-9604
Van Andel Institute · US

Funding

Etheno Adducts in Liver CancerR21CA228089 · NCI · VAN ANDEL RESEARCH INSTITUTE · PI PFEIFER, GERD P · 2018 to 2019
$448k
NCI NIH HHS R21 CA228089
6 · The paper itself

Abstract

Oxidative DNA damage has been linked to inflammation, cancer, and aging. Here, we have mapped two types of oxidative DNA damage, oxidized guanines produced by hydrogen peroxide and oxidized thymines created by potassium permanganate, at a single-base resolution. 8-Oxo-guanine occurs strictly dependent on the G/C sequence context and shows a pronounced peak at transcription start sites (TSSs). We determined the trinucleotide sequence pattern of guanine oxidation. This pattern shows high similarity to the cancer-associated single-base substitution signatures SBS18 and SBS36. SBS36 is found in colorectal cancers that carry mutations in

Indexed as

NeoplasmsUpper Gastrointestinal TractDNA DamageGuanineHumansHydrogen PeroxideInflammationMutationOxidation-ReductionGuanineHydrogen Peroxide

Identifiers

PMID35658030
PMCPMC9166614
OpenAlexW4281946381

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.