Evidence map›Paper›PMID 35678932›Full record

ArticleAntonie van Leeuwenhoek2022

Taxonomy, comparative genomics and evolutionary insights of Penicillium ucsense: a novel species in series Oxalica.

Alexandre Rafael Lenz, Eduardo Balbinot, Fernanda Pessi de Abreu, Nikael Souza de Oliveira, Roselei Claudete Fontana, Scheila de Avila E Silva, Myung Soo Park, Young Woon Lim, Jos Houbraken, Marli Camassola and 1 more

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Antonie van Leeuwenhoek, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.1field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

  1. Two new species ofMycoKeys · 2025
    Article
  2. Review
  3. A review of recently introducedStudies in mycology · 2024
    Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 3 countries.

Alexandre Rafael LenzBioinformatics and Computational Biology Laboratory, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil. arlenz@ucs.br.ORCID http://orcid.org/0000-0001-6699-2899
Eduardo BalbinotBioinformatics and Computational Biology Laboratory, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0002-1322-3153
Fernanda Pessi de AbreuBioinformatics and Computational Biology Laboratory, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0002-5006-4833
Nikael Souza de OliveiraBioinformatics and Computational Biology Laboratory, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0003-4713-4527
Roselei Claudete FontanaLaboratory of Enzymes and Biomass, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0002-2197-1119
Scheila de Avila E SilvaBioinformatics and Computational Biology Laboratory, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0002-3472-3907
Myung Soo ParkSchool of Biological Sciences and Institution of Microbiology, Seoul National University, Seoul, 08826, South Korea.ORCID http://orcid.org/0000-0002-0392-9005
Young Woon LimSchool of Biological Sciences and Institution of Microbiology, Seoul National University, Seoul, 08826, South Korea.ORCID http://orcid.org/0000-0003-2864-3449
Jos HoubrakenWesterdijk Fungal Biodiversity Institute, Uppsalalaan 8, 3584 CT, Utrecht, The Netherlands.ORCID http://orcid.org/0000-0003-4893-4438
Marli CamassolaLaboratory of Enzymes and Biomass, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0001-7410-4337
Aldo José Pinheiro DillonLaboratory of Enzymes and Biomass, Institute of Biotechnology, University of Caxias Do Sul, Francisco Getúlio Vargas Street 1130, Caxias do Sul, RS, 95070-560, Brazil.ORCID http://orcid.org/0000-0002-1969-1740
Universidade de Caxias do Sul · BRSeoul National University · KRWesterdijk Fungal Biodiversity Institute · NL

Funding

Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 3255/2013Coordenação de Aperfeiçoamento de Pessoal de Nível Superior 88887.158496/2017-00Instituto Nacional de Ciência e Tecnologia da Criosfera 472153/2013-7Universidade do Estado da Bahia 3.145/2016
6 · The paper itself

Abstract

The genomes of two Penicillium strains were sequenced and studied in this study: strain 2HH was isolated from the digestive tract of Anobium punctatum beetle larva in 1979 and the cellulase hypersecretory strain S1M29, derived from strain 2HH by a long-term mutagenesis process. With these data, the strains were reclassified and insight is obtained on molecular features related to cellulase hyperproduction and the albino phenotype of the mutant. Both strains were previously identified as Penicillium echinulatum and this investigation indicated that these should be reclassified. Phylogenetic and phenotype data showed that these strains represent a new Penicillium species in series Oxalica, for which the name Penicillium ucsense is proposed here. Six additional strains (SFC101850, SFCP10873, SFCP10886, SFCP10931, SFCP10932 and SFCP10933) collected from the marine environment in the Republic of Korea were also classified as this species, indicating a worldwide distribution of this new taxon. Compared to the closely related strain Penicillium oxalicum 114-2, the composition of cell wall-associated proteins of P. ucsense 2HH shows five fewer chitinases, considerable differences in the number of proteins related to β-D-glucan metabolism. The genomic comparison of 2HH and S1M29 highlighted single amino-acid substitutions in two major proteins (BGL2 and FlbA) that can be associated with the hyperproduction of cellulases. The study of melanin pathways shows that the S1M29 albino phenotype resulted from a single amino-acid substitution in the enzyme ALB1, a precursor of the 1,8-dihydroxynaphthalene (DHN)-melanin biosynthesis. Our study provides important knowledge towards understanding species distribution, molecular mechanisms, melanin production and cell wall biosynthesis of this new Penicillium species.

Indexed as

CellulasePenicilliumGenomicsMelaninsPhylogenyCellulaseMelaninsAlbinismCellulasesFilamentous fungiPenicillium ucsenseRevised taxonomySeries Oxalica

Identifiers

PMID35678932
OpenAlexW4281703743

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.