Evidence map›Paper›PMID 35690826›Full record

ArticlePlant methods2022

A model for genuineness detection in genetically and phenotypically similar maize variety seeds based on hyperspectral imaging and machine learning.

Keling Tu, Shaozhe Wen, Ying Cheng, Yanan Xu, Tong Pan, Haonan Hou, Riliang Gu, Jianhua Wang, Fengge Wang, Qun Sun

Abstract read
In one paragraph

Article in Plant methods, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Keling Tu *Department of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Shaozhe Wen *Beijing Key Laboratory of Vegetable Germplasm Improvement, Beijing Vegetable Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, People's Republic of China.
Ying ChengDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Yanan XuDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Tong PanDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Haonan HouDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Riliang GuDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Jianhua WangDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China.
Fengge WangBeijing Key Laboratory of Maize DNA Fingerprinting and Molecular Breeding, Maize Research Center, Beijing Academy of Agriculture and Forestry Sciences (BAAFS), Beijing, 100097, People's Republic of China. gege0106@163.com.
Qun SunDepartment of Plant Genetics & Breeding and Seed Science, College of Agronomy and Biotechnology, Ministry of Agriculture and Rural Affairs/Beijing Key Laboratory of Crop Genetic Improvement, China Agricultural University/The Innovation Center (Beijing) of Crop Seeds Whole-Process Technology Research, Beijing, 100193, People's Republic of China. sunqun@cau.edu.cn.ORCID http://orcid.org/0000-0002-6880-0560

Funding

National Key Research and Development Project of the 13th Five-year Plan (CN) 2018YFD0100903
6 · The paper itself

Abstract

backgroundVariety genuineness and purity are essential indices of maize seed quality that affect yield. However, detection methods for variety genuineness are time-consuming, expensive, require extensive training, or destroy the seeds in the process. Here, we present an accurate, high-throughput, cost-effective, and non-destructive method for screening variety genuineness that uses seed phenotype data with machine learning to distinguish between genetically and phenotypically similar seed varieties. Specifically, we obtained image data of seed morphology and hyperspectral reflectance for Jingke 968 and nine other closely-related varieties (non-Jingke 968). We then compared the robustness of three common machine learning algorithms in distinguishing these varieties based on the phenotypic imaging data.

resultsOur results showed that hyperspectral imaging (HSI) combined with a multilayer perceptron (MLP) or support vector machine (SVM) model could distinguish Jingke 968 from varieties that differed by as few as two loci, with a 99% or higher accuracy, while machine vision imaging provided  ~ 90% accuracy. Through model validation and updating with varieties not included in the training data, we developed a genuineness detection model for Jingke 968 that effectively discriminated between genetically similar and distant varieties.

conclusionsThis strategy has potential for wide adoption in large-scale variety genuineness detection operations for internal quality control or governmental regulatory agencies, or for accelerating the breeding of new varieties. Besides, it could easily be extended to other target varieties and other crops.

Indexed as

High-throughputMaize seedNon-destructive testingPhenotypingVarietal purity

Identifiers

PMID35690826
PMCPMC9188178

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.