Evidence map›Paper›PMID 35690832›Full record

ArticleJournal of experimental & clinical cancer research : CR2022

The immune landscape of solid pediatric tumors.

Shimaa Sherif, Jessica Roelands, William Mifsud, Eiman I Ahmed, Christophe M Raynaud, Darawan Rinchai, Abbirami Sathappan, Ata Maaz, Ayman Saleh, Erdener Ozer and 5 more

Open access · goldAbstract read
In one paragraph

Article in Journal of experimental & clinical cancer research : CR, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
4.2field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 38 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 8 institutions in 6 countries.

Shimaa SherifCollege of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar.
Jessica RoelandsHuman Immunology Department, Research Branch, Sidra Medicine, Doha, Qatar.
William MifsudDepartment of Pathology, Doha, Qatar.
Eiman I AhmedHuman Immunology Department, Research Branch, Sidra Medicine, Doha, Qatar.
Christophe M RaynaudHuman Immunology Department, Research Branch, Sidra Medicine, Doha, Qatar.
Darawan RinchaiHuman Immunology Department, Research Branch, Sidra Medicine, Doha, Qatar.
Abbirami SathappanDeep phenotyping core, Research Branch, Sidra Medicine, Doha, Qatar.
Ata MaazPediatric Hematology and Oncology Division, Sidra Medicine, Doha, Qatar.
Ayman SalehPediatric Hematology and Oncology Division, Sidra Medicine, Doha, Qatar.
Erdener OzerDepartment of Pathology, Doha, Qatar.
Khalid A FakhroHuman Genetics Department, Research Branch, Sidra Medicine, Doha, Qatar.
Borbala MifsudCollege of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar.
Vésteinn ThorssonInstitute for Systems Biology, 401 Terry Ave N, Seattle, WA, 98109, USA.
Davide BedognettiCollege of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar. dbedognetti@sidra.org.
Wouter R L HendrickxCollege of Health and Life Sciences, Hamad Bin Khalifa University, Doha, Qatar. whendrickx@sidra.org.ORCID http://orcid.org/0000-0002-7649-5092
Qatar Airways (Qatar) · QAWeill Cornell Medical College in Qatar · QADokuz Eylül University · TRHamad bin Khalifa University · QAInstitute for Systems Biology · USLeiden University Medical Center · NLNortheast Ohio Medical University · USQueen Mary University of London · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLarge immunogenomic analyses have demonstrated the prognostic role of the functional orientation of the tumor microenvironment in adult solid tumors, this variable has been poorly explored in the pediatric counterpart.

methodsWe performed a systematic analysis of public RNAseq data (TARGET) for five pediatric tumor types (408 patients): Wilms tumor (WLM), neuroblastoma (NBL), osteosarcoma (OS), clear cell sarcoma of the kidney (CCSK) and rhabdoid tumor of the kidney (RT). We assessed the performance of the Immunologic Constant of Rejection (ICR), which captures an active Th1/cytotoxic response. We also performed gene set enrichment analysis (ssGSEA) and clustered more than 100 well characterized immune traits to define immune subtypes and compared their outcome.

resultsA higher ICR score was associated with better survival in OS and high risk NBL without MYCN amplification but with poorer survival in WLM. Clustering of immune traits revealed the same five principal modules previously described in adult tumors (TCGA). These modules divided pediatric patients into six immune subtypes (S1-S6) with distinct survival outcomes. The S2 cluster showed the best overall survival, characterized by low enrichment of the wound healing signature, high Th1, and low Th2 infiltration, while the reverse was observed in S4. Upregulation of the WNT/Beta-catenin pathway was associated with unfavorable outcomes and decreased T-cell infiltration in OS.

conclusionsWe demonstrated that extracranial pediatric tumors could be classified according to their immune disposition, unveiling similarities with adults' tumors. Immunological parameters might be explored to refine diagnostic and prognostic biomarkers and to identify potential immune-responsive tumors.

Indexed as

Bone NeoplasmsNeuroblastomaOsteosarcomaAdultChildHumansPrognosisTumor MicroenvironmentImmune phenotypesNeuroblastomaOsteosarcomaPediatric cancer

Identifiers

PMID35690832
PMCPMC9188257
OpenAlexW4282921148

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.