Evidence map›Paper›PMID 35701597›Full record

ArticleMolecular psychiatry2022

Impact of schizophrenia GWAS loci converge onto distinct pathways in cortical interneurons vs glutamatergic neurons during development.

Dongxin Liu, Amy Zinski, Akanksha Mishra, Haneul Noh, Gun-Hoo Park, Yiren Qin, Oshoname Olorife, James M Park, Chiderah P Abani, Joy S Park and 15 more

Open access · greenAbstract read
In one paragraph

Article in Molecular psychiatry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

25 authors at 6 institutions in 3 countries.

Dongxin LiuDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA. dxliu@cmu.edu.cn.
Amy ZinskiDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Akanksha MishraDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Haneul NohDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Gun-Hoo ParkDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.ORCID http://orcid.org/0000-0001-7860-3459
Yiren QinDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Oshoname OlorifeDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
James M ParkDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Chiderah P AbaniDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.ORCID http://orcid.org/0000-0002-1718-5043
Joy S ParkDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Janice FungDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Farah SawaqedDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Joseph T CoyleDepartment of Psychiatry, McLean Hospital/Harvard Medical School, Belmont, MA, 02478, USA.
Eli StahlPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, 1470 Madison Avenue, New York, NY, 10029, USA.
Jaroslav BendlPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, 1470 Madison Avenue, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0001-9989-2720
John F FullardPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, 1470 Madison Avenue, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0001-9874-2907
Panos RoussosPamela Sklar Division of Psychiatric Genomics, Icahn School of Medicine at Mount Sinai, 1470 Madison Avenue, New York, NY, 10029, USA.ORCID http://orcid.org/0000-0002-4640-6239
Xiaolei ZhangDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Patric K StantonDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA.
Changhong YinDepartment of Pathology, New York Medical College, Valhalla, NY, 10595, USA.
Weihua HuangDepartment of Pathology, New York Medical College, Valhalla, NY, 10595, USA.
Hae-Young KimDepartment of Public Health, New York Medical College, Valhalla, NY, USA.ORCID http://orcid.org/0000-0001-7916-6625
Hyejung WonDepartment of Genetics, University of North Carolina, Chapel Hill, NC, 27599, USA.ORCID http://orcid.org/0000-0003-3651-0566
Jun-Hyeong ChoDepartment of Molecular, Cell and Systems Biology, University of California, Riverside, CA, 92521, USA.ORCID http://orcid.org/0000-0002-6844-3583
Sangmi ChungDepartment of Cell biology and Anatomy, New York Medical College, Valhalla, NY, 10595, USA. schung8@nymc.edu.ORCID http://orcid.org/0000-0002-8737-9978
New York Medical College · USAllen Institute for Brain Science · USHarvard University · USIcahn School of Medicine at Mount Sinai · USUniversity of California, Riverside · USUniversity of North Carolina at Chapel Hill · US

Funding

The 3D genome in transcriptional regulation across the postnatal life span, with implications for schizophrenia and bipolar disorderU01MH116442 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI AKBARIAN, SCHAHRAM, DRACHEVA, STELLA · 2018 to 2022
$5.9M
Multiethnic genomic epigenomic and transcriptomic fine-mapping and functional validation analysis of schizophrenia and bipolar disorder risk lociR01MH125246 · NIMH · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI ROUSSOS, PANAGIOTIS · 2021 to 2025
$5.0M
Deciphering Cell-type Specific Regulatory Landscape in Human BrainDP2MH122403 · NIMH · UNIV OF NORTH CAROLINA CHAPEL HILL · PI WON, HYEJUNG · 2019 to 2019
$2.3M
iPSC derived human cortical interneurons as developmental model of SchizophreniaR01MH107884 · NIMH · NEW YORK MEDICAL COLLEGE · PI CHUNG, SANGMI · 2015 to 2019
$2.2M
COVID and Translational Science supercomputer (CATS)S10OD030463 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2021 to 2021
$2.0M
Big Omics Data Engine 2 SupercomputerS10OD026880 · OD · ICAHN SCHOOL OF MEDICINE AT MOUNT SINAI · PI KOVATCH, PATRICIA · 2019 to 2019
$2.0M
Acquisition and Consolidation of Contextual Fear Memory in Engram Cell PathwaysR01MH118339 · NIMH · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHO, JUN-HYEONG · 2019 to 2025
$1.9M
Neural Mechanisms of Discriminative Auditory Fear ConditioningR56MH113894 · NIMH · UNIVERSITY OF CALIFORNIA RIVERSIDE · PI CHO, JUN-HYEONG · 2018 to 2019
$777k
Stem Cell-Derived Developmental Human Cortical Interneurons to Treat Intractable EpilepsyR56NS121541 · NINDS · NEW YORK MEDICAL COLLEGE · PI CHUNG, SANGMI · 2021 to 2021
$566k
NIH HHS S10 OD026880NIH HHS S10 OD030463NIMH NIH HHS DP2 MH122403NIMH NIH HHS R01 MH107884NIMH NIH HHS R01 MH118339NIMH NIH HHS R01 MH125246NIMH NIH HHS R56 MH113894NIMH NIH HHS U01 MH116442NINDS NIH HHS R56 NS121541
6 · The paper itself

Abstract

Remarkable advances have been made in schizophrenia (SCZ) GWAS, but gleaning biological insight from these loci is challenging. Genetic influences on gene expression (e.g., eQTLs) are cell type-specific, but most studies that attempt to clarify GWAS loci's influence on gene expression have employed tissues with mixed cell compositions that can obscure cell-specific effects. Furthermore, enriched SCZ heritability in the fetal brain underscores the need to study the impact of SCZ risk loci in specific developing neurons. MGE-derived cortical interneurons (cINs) are consistently affected in SCZ brains and show enriched SCZ heritability in human fetal brains. We identified SCZ GWAS risk genes that are dysregulated in iPSC-derived homogeneous populations of developing SCZ cINs. These SCZ GWAS loci differential expression (DE) genes converge on the PKC pathway. Their disruption results in PKC hyperactivity in developing cINs, leading to arborization deficits. We show that the fine-mapped GWAS locus in the ATP2A2 gene of the PKC pathway harbors enhancer marks by ATACseq and ChIPseq, and regulates ATP2A2 expression. We also generated developing glutamatergic neurons (GNs), another population with enriched SCZ heritability, and confirmed their functionality after transplantation into the mouse brain. Then, we identified SCZ GWAS risk genes that are dysregulated in developing SCZ GNs. GN-specific SCZ GWAS loci DE genes converge on the ion transporter pathway, distinct from those for cINs. Disruption of the pathway gene CACNA1D resulted in deficits of Ca

Indexed as

SchizophreniaAnimalsBrainGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansInterneuronsMiceNeurons

Identifiers

PMID35701597
PMCPMC12180536
OpenAlexW4282824480

What Socratic holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.