Evidence map›Paper›PMID 35741292›Full record

ArticleDiagnostics (Basel, Switzerland)2022

COVLIAS 2.0-cXAI: Cloud-Based Explainable Deep Learning System for COVID-19 Lesion Localization in Computed Tomography Scans.

Jasjit S Suri, Sushant Agarwal, Gian Luca Chabert, Alessandro Carriero, Alessio Paschè, Pietro S C Danna, Luca Saba, Armin Mehmedović, Gavino Faa, Inder M Singh and 31 more

Abstract read
In one paragraph

Article in Diagnostics (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

41 authors.

Jasjit S SuriStroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.
Sushant AgarwalAdvanced Knowledge Engineering Centre, GBTI, Roseville, CA 95661, USA.ORCID 0000-0003-2360-3886
Gian Luca ChabertDepartment of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09123 Cagliari, Italy.ORCID 0000-0002-0005-5242
Alessandro CarrieroDepartment of Radiology, "Maggiore della Carità" Hospital, University of Piemonte Orientale (UPO), Via Solaroli 17, 28100 Novara, Italy.
Alessio PaschèDepartment of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09123 Cagliari, Italy.
Pietro S C DannaDepartment of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09123 Cagliari, Italy.ORCID 0000-0001-8928-7666
Luca SabaDepartment of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09123 Cagliari, Italy.
Armin MehmedovićDepartment of Radiology, University Hospital for Infectious Diseases, 10000 Zagreb, Croatia.
Gavino FaaDepartment of Pathology, Azienda Ospedaliero Universitaria (A.O.U.), 09124 Cagliari, Italy.ORCID 0000-0002-0189-8612
Inder M SinghStroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.
Monika TurkThe Hanse-Wissenschaftskolleg Institute for Advanced Study, 27753 Delmenhorst, Germany.
Paramjit S ChadhaStroke Diagnostic and Monitoring Division, AtheroPoint™, Roseville, CA 95661, USA.
Amer M JohriDepartment of Medicine, Division of Cardiology, Queen's University, Kingston, ON K7L 3N6, Canada.
Narendra N KhannaDepartment of Cardiology, Indraprastha APOLLO Hospitals, New Delhi 110076, India.
Sophie MavrogeniCardiology Clinic, Onassis Cardiac Surgery Center, 17674 Athens, Greece.
John R LairdHeart and Vascular Institute, Adventist Health St. Helena, St. Helena, CA 94574, USA.
Gyan PareekMinimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA.
Martin MinerMen's Health Center, Miriam Hospital, Providence, RI 02912, USA.
David W SobelMinimally Invasive Urology Institute, Brown University, Providence, RI 02912, USA.
Antonella BalestrieriDepartment of Radiology, Azienda Ospedaliero Universitaria (A.O.U.), 09123 Cagliari, Italy.
Petros P SfikakisRheumatology Unit, National Kapodistrian University of Athens, 17674 Athens, Greece.
George TsoulfasDepartment of Surgery, Aristoteleion University of Thessaloniki, 54124 Thessaloniki, Greece.ORCID 0000-0001-5043-7962
Athanasios D ProtogerouCardiovascular Prevention and Research Unit, Department of Pathophysiology, National & Kapodistrian University of Athens, 15772 Athens, Greece.ORCID 0000-0002-3825-532X
Durga Prasanna MisraDepartment of Immunology, SGPIMS, Lucknow 226014, India.
Vikas AgarwalDepartment of Immunology, SGPIMS, Lucknow 226014, India.
George D KitasAcademic Affairs, Dudley Group NHS Foundation Trust, Dudley DY1 2HQ, UK.
Jagjit S TejiAnn and Robert H. Lurie Children's Hospital of Chicago, Chicago, IL 60611, USA.
Mustafa Al-MainiAllergy, Clinical Immunology and Rheumatology Institute, Toronto, ON M5G 1N8, Canada.
Surinder K DhanjilAtheroPoint LLC., Roseville, CA 95661, USA.
Andrew NicolaidesVascular Screening and Diagnostic Centre, University of Nicosia Medical School, Engomi 2408, Cyprus.
Aditya SharmaDivision of Cardiovascular Medicine, University of Virginia, Charlottesville, VA 22902, USA.
Vijay RathoreAtheroPoint LLC., Roseville, CA 95661, USA.
Mostafa FatemiDepartment of Physiology & Biomedical Engineering, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.ORCID 0000-0002-6603-9077
Azra AlizadDepartment of Radiology, Mayo Clinic College of Medicine and Science, Rochester, MN 55905, USA.ORCID 0000-0002-7658-1572
Pudukode R KrishnanNeurology Department, Fortis Hospital, Bengaluru 560076, India.
Ferenc NagyInternal Medicine Department, University of Szeged, 6725 Szeged, Hungary.ORCID 0000-0003-3512-5850
Zoltan RuzsaInvasive Cardiology Division, University of Szeged, 1122 Budapest, Hungary.
Mostafa M FoudaDepartment of ECE, Idaho State University, Pocatello, ID 83209, USA.ORCID 0000-0003-1790-8640
Subbaram NaiduElectrical Engineering Department, University of Minnesota, Duluth, MN 55812, USA.ORCID 0000-0001-8544-8397
Klaudija ViskovicDepartment of Radiology, University Hospital for Infectious Diseases, 10000 Zagreb, Croatia.
Mannudeep K KalraDepartment of Radiology, Massachusetts General Hospital, 55 Fruit Street, Boston, MA 02114, USA.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: The previous COVID-19 lung diagnosis system lacks both scientific validation and the role of explainable artificial intelligence (AI) for understanding lesion localization. This study presents a cloud-based explainable AI, the “COVLIAS 2.0-cXAI” system using four kinds of class activation maps (CAM) models. Methodology: Our cohort consisted of ~6000 CT slices from two sources (Croatia, 80 COVID-19 patients and Italy, 15 control patients). COVLIAS 2.0-cXAI design consisted of three stages: (i) automated lung segmentation using hybrid deep learning ResNet-UNet model by automatic adjustment of Hounsfield units, hyperparameter optimization, and parallel and distributed training, (ii) classification using three kinds of DenseNet (DN) models (DN-121, DN-169, DN-201), and (iii) validation using four kinds of CAM visualization techniques: gradient-weighted class activation mapping (Grad-CAM), Grad-CAM++, score-weighted CAM (Score-CAM), and FasterScore-CAM. The COVLIAS 2.0-cXAI was validated by three trained senior radiologists for its stability and reliability. The Friedman test was also performed on the scores of the three radiologists. Results: The ResNet-UNet segmentation model resulted in dice similarity of 0.96, Jaccard index of 0.93, a correlation coefficient of 0.99, with a figure-of-merit of 95.99%, while the classifier accuracies for the three DN nets (DN-121, DN-169, and DN-201) were 98%, 98%, and 99% with a loss of ~0.003, ~0.0025, and ~0.002 using 50 epochs, respectively. The mean AUC for all three DN models was 0.99 (p < 0.0001). The COVLIAS 2.0-cXAI showed 80% scans for mean alignment index (MAI) between heatmaps and gold standard, a score of four out of five, establishing the system for clinical settings. Conclusions: The COVLIAS 2.0-cXAI successfully showed a cloud-based explainable AI system for lesion localization in lung CT scans.

Indexed as

classificationCOVID-19 lesionexplainable AIFasterScore-CAMglass ground opacitiesGrad-CAM++GRAD-CAMHounsfield unitshybrid deep learninglung CTScore-CAMsegmentation

Identifiers

PMID35741292
PMCPMC9221733

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.