Evidence map›Paper›PMID 35759154›Full record

ArticleJournal of autism and developmental disorders2023

Whole Genome Analysis of Dizygotic Twins With Autism Reveals Prevalent Transposon Insertion Within Neuronal Regulatory Elements: Potential Implications for Disease Etiology and Clinical Assessment.

Kaan Okay, Pelin Ünal Varış, Süha Miral, Athanasia Pavlopoulou, Yavuz Oktay, Gökhan Karakülah

Open access · greenAbstract read
PubMed Publisher
In one paragraph

Article in Journal of autism and developmental disorders, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
1.1field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Derepression of transposable elements in the mouse prefrontal cortex disrupts social behavior.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  3. Review
  4. Retrotransposons in embryogenesis and neurodevelopment.Biochemical Society transactions · 2024
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 3 institutions in 3 countries.

Kaan OkayIzmir International Biomedicine and Genome Institute, Dokuz Eylül University, 35340, Izmir, Turkey.
Pelin Ünal VarışDepartment of Child and Adolescent Psychiatry, Faculty of Medicine, Dokuz Eylül University, 35340, Izmir, Turkey.
Süha MiralDepartment of Child and Adolescent Psychiatry, Faculty of Medicine, Dokuz Eylül University, 35340, Izmir, Turkey.
Athanasia PavlopoulouIzmir International Biomedicine and Genome Institute, Dokuz Eylül University, 35340, Izmir, Turkey.
Yavuz OktayIzmir International Biomedicine and Genome Institute, Dokuz Eylül University, 35340, Izmir, Turkey. yavuz.oktay@ibg.edu.tr.
Gökhan KarakülahIzmir International Biomedicine and Genome Institute, Dokuz Eylül University, 35340, Izmir, Turkey. gokhan.karakulah@deu.edu.tr.ORCID http://orcid.org/0000-0001-6706-1375
Izmir University · TRDokuz Eylül University · TRIzmir Institute of Technology · TR

Funding

Dokuz Eylül Üniversitesi DEU-BAP-2016/142
6 · The paper itself

Abstract

Transposable elements (TEs) have been implicated in autism spectrum disorder (ASD). However, our understanding of their roles is far from complete. Herein, we explored de novo TE insertions (dnTEIs) and de novo variants (DNVs) across the genomes of dizygotic twins with ASD and their parents. The neuronal regulatory elements had a tendency to harbor dnTEIs that were shared between twins, but ASD-risk genes had dnTEIs that were unique to each twin. The dnTEIs were 4.6-fold enriched in enhancers that are active in embryonic stem cell (ESC)-neurons (p < 0.001), but DNVs were 1.5-fold enriched in active enhancers of astrocytes (p = 0.0051). Our findings suggest that dnTEIs and DNVs play a role in ASD etiology by disrupting enhancers of neurons and astrocytes.

Indexed as

Autism Spectrum DisorderAutistic DisorderHumansTwins, DizygoticAutism spectrum disorderQuartet familiesTransposable elementVariant callingWhole genome sequencing

Identifiers

PMID35759154
OpenAlexW4283584813

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.