Evidence map›Paper›PMID 35766062›Full record

ArticleGenetic epidemiology2022

Statistical power of transcriptome-wide association studies.

Ruoyu He, Haoran Xue, Wei Pan, Alzheimer's Disease Neuroimaging Initiative

Abstract read
In one paragraph

Article in Genetic epidemiology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Ruoyu HeSchool of Statistics, University of Minnesota, Minneapolis, Minnesota, USA.
Haoran XueUniversity of Minnesota, Division of Biostatistics, School of Public Health, Minneapolis, Minnesota, USA.
Wei PanUniversity of Minnesota, Division of Biostatistics, School of Public Health, Minneapolis, Minnesota, USA.ORCID 0000-0002-1159-0582
Alzheimer's Disease Neuroimaging Initiative

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
National Centralized Repository for Alzheimer's Disease and Related Dementias (NCRAD)U24AG021886 · NIA · INDIANA UNIV-PURDUE UNIV AT INDIANAPOLIS · PI TATIANA M. FOROUD · 2002 to 2026
$119.8M
Causal and integrative deep learning for Alzheimer's disease geneticsU01AG073079 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2021 to 2025
$3.5M
Association analysis of rare variants with sequencing dataR01HL116720 · NHLBI · UNIVERSITY OF MINNESOTA · PI PAN, WEI, WEI, PENG · 2013 to 2020
$3.3M
Discovering causal genes, brain regions and other risk factors for Alzheimer's DiseaseR01AG065636 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2020 to 2024
$3.1M
Integrating Alzheimer's disease GWAS with proteomic and metabolomic QTL dataRF1AG067924 · NIA · UNIVERSITY OF MINNESOTA · PI PAN, WEI · 2020 to 2020
$1.9M
Medical Research Council MC_PC_17228Medical Research Council MC_QA137853NHLBI NIH HHS R01 HL116720NIA NIH HHS R01 AG065636NIA NIH HHS RF1 AG067924NIA NIH HHS U01 AG024904NIA NIH HHS U01 AG073079NIA NIH HHS U24 AG021886
6 · The paper itself

Abstract

Transcriptome-Wide Association Studies (TWASs) have become increasingly popular in identifying genes (or other endophenotypes or exposures) associated with complex traits. In TWAS, one first builds a predictive model for gene expressions using an expression quantitative trait loci (eQTL) data set in stage 1, then tests the association between the predicted gene expression and a trait based on a large, independent genome-wide association study (GWAS) data set in stage 2. However, since the sample size of the eQTL data set is usually small and the coefficient of multiple determination (i.e.,

Indexed as

Alzheimer DiseaseTranscriptomeGenetic Predisposition to DiseaseGenome-Wide Association StudyHumansModels, GeneticPolymorphism, Single NucleotideQuantitative Trait Loci2SLSAlzheimer's diseasecausal inferencesample sizeTWAS

Identifiers

PMID35766062
PMCPMC9669108

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.