Evidence map›Paper›PMID 35840822›Full record

ArticleMammalian genome : official journal of the International Mammalian Genome Society2022

Prune homolog 2 with BCH domain (PRUNE2) gene expression is associated with feed efficiency-related traits in Nelore steers.

Andressa Oliveira Lima, Jessica Moraes Malheiros, Juliana Afonso, Juliana Petrini, Luiz Lehmann Coutinho, Wellison Jarles da Silva Diniz, Flávia Aline Bressani, Polyana Cristine Tizioto, Priscila Silva Neubern de Oliveira, Janssen Ayna Silva Ribeiro and 9 more

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In one paragraph

Article in Mammalian genome : official journal of the International Mammalian Genome Society, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors.

Andressa Oliveira Lima *Center for Biological and Health Sciences, Federal University of São Carlos, São CarlosSão Paulo, 13560-970, Brazil.
Jessica Moraes Malheiros *Animal Biotechnology Laboratory-Embrapa Southeast Livestock, São Carlos, Brazil.
Juliana AfonsoAnimal Biotechnology Laboratory-Embrapa Southeast Livestock, São Carlos, Brazil.
Juliana PetriniDepartment of Animal Science, University of São Paulo/ESALQ, PiracicabaSão Paulo, 13418-900, Brazil.
Luiz Lehmann CoutinhoDepartment of Animal Science, University of São Paulo/ESALQ, PiracicabaSão Paulo, 13418-900, Brazil.
Wellison Jarles da Silva DinizCenter for Biological and Health Sciences, Federal University of São Carlos, São CarlosSão Paulo, 13560-970, Brazil.
Flávia Aline BressaniAnimal Biotechnology Laboratory-Embrapa Southeast Livestock, São Carlos, Brazil.
Polyana Cristine TiziotoNGS Soluções Genômicas, Rua Ajudante Albano 847, Piracicaba, SP, Brazil.
Priscila Silva Neubern de OliveiraAnimal Biotechnology Laboratory-Embrapa Southeast Livestock, São Carlos, Brazil.
Janssen Ayna Silva RibeiroCenter for Biological and Health Sciences, Federal University of São Carlos, São CarlosSão Paulo, 13560-970, Brazil.
Karina Santos de OliveiraCenter for Biological and Health Sciences, Federal University of São Carlos, São CarlosSão Paulo, 13560-970, Brazil.
Marina Ibelli Pereira RochaCenter for Biological and Health Sciences, Federal University of São Carlos, São CarlosSão Paulo, 13560-970, Brazil.
Bruno Gabriel Nascimento AndradeDepartment of Computer Science, Munster Technological University, Cork, Ireland.
Heidge FukumasuDepartment of Veterinary Medicine, University of São Paulo, Pirassununga, 13635-900, Brazil.
Hamid BeikiDepartment of Animal Science, Iowa State University, Ames, USA.
James Mark ReecyDepartment of Animal Science, Iowa State University, Ames, USA.
Adhemar ZerlotiniBioinformatic Multi-User Laboratory, Embrapa Informática Agropecuária, Campinas, São Paulo, Brazil.
Gerson Barreto MouraoDepartment of Animal Science, University of São Paulo/ESALQ, PiracicabaSão Paulo, 13418-900, Brazil.
Luciana Correia de Almeida RegitanoAnimal Biotechnology Laboratory-Embrapa Southeast Livestock, São Carlos, Brazil. luciana.regitano@embrapa.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Animal feeding is a critical factor in increasing producer profitability. Improving feed efficiency can help reduce feeding costs and reduce the environmental impact of beef production. Candidate genes previously identified for this trait in differential gene expression studies (e.g., case-control studies) have not examined continuous gene-phenotype variation, which is a limitation. The aim of this study was to investigate the association between the expression of five candidate genes in the liver, measured by quantitative real-time PCR and feed-related traits. We adopted a linear mixed model to associate liver gene expression from 52 Nelore steers with the following production traits: average daily gain (ADG), body weight (BW), dry matter intake (DMI), feed conversion ratio (FCR), feed efficiency (FE), Kleiber index (KI), metabolic body weight (MBW), residual feed intake (RFI), and relative growth ratio (RGR). The total expression of the prune homolog 2 (PRUNE2) gene was significantly associated with DMI, FCR, FE, and RFI (P < 0.05). Furthermore, we have identified a new transcript of PRUNE2 (TCONS_00027692, GenBank MZ041267) that was inversely correlated with FCR and FE (P < 0.05), in contrast to the originally identified PRUNE2 transcript. The cytochrome P450 subfamily 2B (CYP2B6), early growth response protein 1 (EGR1), collagen type I alpha 1 chain (COL1A1), and connective tissue growth factor (CTGF) genes were not associated with any feed efficiency-related traits (P > 0.05). The findings reported herein suggest that PRUNE2 expression levels affects feed efficiency-related traits variation in Nelore steers.

Indexed as

Animal FeedEatingAnimalsBody WeightCattleGene ExpressionPhenotype

Identifiers

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.