Evidence map›Paper›PMID 35858306›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Specialization of the photoreceptor transcriptome by

Ludovica Ciampi, Federica Mantica, Laura López-Blanch, Jon Permanyer, Cristina Rodriguez-Marín, Jingjing Zang, Damiano Cianferoni, Senda Jiménez-Delgado, Sophie Bonnal, Samuel Miravet-Verde and 7 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.

0numbers the graph read from it
0cells of the map it votes in
22citing papers in PubMed
3.8field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

22 citing papers in PubMed, 45 citations in OpenAlex.

  1. Article
  2. Review
  3. Dynamic changes in mRNA isoform usage during human retinal development.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

17 authors at 6 institutions in 3 countries.

Ludovica CiampiCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0002-3309-2402
Federica ManticaCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0001-9794-9770
Laura López-BlanchCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0001-8905-7094
Jon PermanyerCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0001-7641-4451
Cristina Rodriguez-MarínCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0001-6772-4853
Jingjing ZangDepartment of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.
Damiano CianferoniCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0003-0702-2758
Senda Jiménez-DelgadoCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.
Sophie BonnalCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0001-6096-3042
Samuel Miravet-VerdeCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0002-1542-5912
Verena RuprechtCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.
Stephan C F NeuhaussDepartment of Molecular Life Sciences, University of Zurich, CH-8057 Zurich, Switzerland.ORCID 0000-0002-9615-480X
Sandro BanfiMedical Genetics, Department of Precision Medicine, University of Campania "L. Vanvitelli", 80138 Naples, Italy.
Sabrina CarrellaTelethon Institute of Genetics and Medicine, 80078 Pozzuoli, Italy.
Luis SerranoCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0002-5276-1392
Sarah A HeadCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0002-8942-7785
Manuel IrimiaCentre for Genomic Regulation, Barcelona Institute of Science and Technology, 08036 Barcelona, Spain.ORCID 0000-0002-2179-2567
Centre for Genomic Regulation · ESInstitució Catalana de Recerca i Estudis Avançats · ESUniversity of Zurich · CHStazione Zoologica Anton Dohrn · ITUniversitat Pompeu Fabra · ESUniversity of Campania "Luigi Vanvitelli" · IT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Retinal photoreceptors have a distinct transcriptomic profile compared to other neuronal subtypes, likely reflecting their unique cellular morphology and function in the detection of light stimuli by way of the ciliary outer segment. We discovered a layer of this molecular specialization by revealing that the vertebrate retina expresses the largest number of tissue-enriched microexons of all tissue types. A subset of these microexons is included exclusively in photoreceptor transcripts, particularly in genes involved in cilia biogenesis and vesicle-mediated transport. This microexon program is regulated by

Indexed as

ProteinsRetinal Photoreceptor Cell Outer SegmentSerine-Arginine Splicing FactorsVision, OcularAnimalsExonsGene DeletionHumansTranscriptomeZebrafishZebrafish ProteinsProteinsSerine-Arginine Splicing FactorsSRRM3 protein, humanZebrafish Proteinsalternative splicingretinal disease modelzebrafish

Identifiers

PMID35858306
PMCPMC9303857
OpenAlexW4285091885

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.