Evidence map›Paper›PMID 35858548›Full record

ArticleCell reports2022

Activation domains can decouple the mean and noise of gene expression.

Kaiser Loell, Yawei Wu, Max V Staller, Barak Cohen

Open access · goldAbstract read
In one paragraph

Article in Cell reports, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
1.0field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. bioRxiv : the preprint server for biology · 2025
    Article
  4. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 2 institutions in 1 country.

Kaiser LoellDepartment of Genetics, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA; The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA.
Yawei WuDepartment of Genetics, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA; The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA.
Max V StallerCenter for Computational Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Barak CohenDepartment of Genetics, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA; The Edison Family Center for Genome Sciences & Systems Biology, Washington University School of Medicine in St. Louis, St. Louis, MO 63108, USA. Electronic address: cohen@wustl.edu.
Washington University in St. Louis · USUniversity of California, Berkeley · US

Funding

PROMOTERSR01GM092910 · NIGMS · WASHINGTON UNIVERSITY · PI Barak A Cohen · 2011 to 2026
$6.6M
High-throughput analysis of the effects of gene promoters and chromosomal environments on single-cell gene expressionR01HG012304 · NHGRI · WASHINGTON UNIVERSITY · PI COHEN, BARAK A · 2022 to 2025
$1.7M
Molecular Properties of Transcription Factors that Control Cell-to-Cell Variability in Gene ExpressionR01GM140711 · NIGMS · WASHINGTON UNIVERSITY · PI COHEN, BARAK A · 2021 to 2024
$1.3M
NHGRI NIH HHS R01 HG012304NIGMS NIH HHS R01 GM092910NIGMS NIH HHS R01 GM140711
6 · The paper itself

Abstract

Regulatory mechanisms set a gene's average level of expression, but a gene's expression constantly fluctuates around that average. These stochastic fluctuations, or expression noise, play a role in cell-fate transitions, bet hedging in microbes, and the development of chemotherapeutic resistance in cancer. An outstanding question is what regulatory mechanisms contribute to noise. Here, we demonstrate that, for a fixed mean level of expression, strong activation domains (ADs) at low abundance produce high expression noise, while weak ADs at high abundance generate lower expression noise. We conclude that differences in noise can be explained by the interplay between a TF's nuclear concentration and the strength of its AD's effect on mean expression, without invoking differences between classes of ADs. These results raise the possibility of engineering gene expression noise independently of mean levels in synthetic biology contexts and provide a potential mechanism for natural selection to tune the noisiness of gene expression.

Indexed as

Selection, GeneticSynthetic BiologyGene ExpressionStochastic ProcessesCP: Molecular biologynoisesingle-cell variabilitystochastic gene expressionsynthetic biologytranscriptiontranscriptional regulationtranscription factorsyeast genetics

Identifiers

PMID35858548
PMCPMC9912357
OpenAlexW4286250231

What Socratic holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.