Evidence map›Paper›PMID 35878037›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Crystal structure of the Ate1 arginyl-tRNA-protein transferase and arginylation of N-degron substrates.

Bong Heon Kim, Min Kyung Kim, Sun Joo Oh, Kha The Nguyen, Jun Hoe Kim, Alexander Varshavsky, Cheol-Sang Hwang, Hyun Kyu Song

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 18 papers.

0numbers the graph read from it
0cells of the map it votes in
18citing papers in PubMed
2.6field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

18 citing papers in PubMed, 26 citations in OpenAlex.

  1. Article
  2. A C-degron regulates Chk1 kinase by allowing stability of inactive Chk1 and by making it short- lived upon activation.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
  3. Review
  4. Article
  5. Review
  6. Article
  7. Review
  8. Article
  9. N-degron pathways.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
  10. Article
  11. Article
  12. Article
  13. tRNAmicroPublication biology · 2024
    Article
  14. Article
  15. Review
  16. Protein Arginylation: Milestones of Discovery.Methods in molecular biology (Clifton, N.J.) · 2023
    Article
  17. Article
  18. Crystal structure of the Ate1 arginyl-tRNA-protein transferase and arginylation of N-degron substrates.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 2 countries.

Bong Heon KimDepartment of Life Sciences, Korea University, Seoul 02841, South Korea.
Min Kyung KimDepartment of Life Sciences, Korea University, Seoul 02841, South Korea.
Sun Joo OhDepartment of Life Sciences, Korea University, Seoul 02841, South Korea.
Kha The NguyenDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, South Korea.
Jun Hoe KimDepartment of Life Sciences, Korea University, Seoul 02841, South Korea.
Alexander VarshavskyDivision of Biology and Biological Engineering, California Institute of Technology, Pasadena, CA 91125.ORCID 0000-0002-4011-258X
Cheol-Sang HwangDepartment of Life Sciences, Pohang University of Science and Technology, Pohang 37673, South Korea.
Hyun Kyu SongDepartment of Life Sciences, Korea University, Seoul 02841, South Korea.ORCID 0000-0001-5684-4059
Korea University · KRPohang University of Science and Technology · KRCalifornia Institute of Technology · US

Funding

The Functions, Mechanisms, and Regulation of N-Terminal ArginylationR01GM031530 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI ALEXANDER J VARSHAVSKY · 1985 to 2026
$14.5M
Ubiquitin Ligases, Mechanisms and Functions of the N-End Rule PathwayR01DK039520 · NIDDK · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI VARSHAVSKY, ALEXANDER J · 1988 to 2025
$10.0M
NIDDK NIH HHS R01 DK039520NIGMS NIH HHS R01 GM031530
6 · The paper itself

Abstract

N-degron pathways are proteolytic systems that target proteins bearing N-terminal (Nt) degradation signals (degrons) called N-degrons. Nt-Arg of a protein is among Nt-residues that can be recognized as destabilizing ones by the Arg/N-degron pathway. A proteolytic cleavage of a protein can generate Arg at the N terminus of a resulting C-terminal (Ct) fragment either directly or after Nt-arginylation of that Ct-fragment by the Ate1 arginyl-tRNA-protein transferase (R-transferase), which uses Arg-tRNA

Indexed as

AminoacyltransferasesArginineModels, MolecularAnimalsHeminMutationPeptidesProteinsProtein Structure, TertiaryProteolysisRNA, Transfer, ArgAminoacyltransferasesArginineHeminPeptidesProteinsRNA, Transfer, ArgarginineAte1degronheminubiquitin

Identifiers

PMID35878037
PMCPMC9351520
OpenAlexW4287838938

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.