Evidence map›Paper›PMID 35883685›Full record

ArticleCells2022

IDO1, FAT10, IFI6, and GILT Are Involved in the Antiretroviral Activity of γ-Interferon and IDO1 Restricts Retrovirus Infection by Autophagy Enhancement.

Yoshinao Kubo, Kiyoshi Yasui, Mai Izumida, Hideki Hayashi, Toshifumi Matsuyama

Open access · goldAbstract read
In one paragraph

Article in Cells, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 12 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Yoshinao KuboDepartment of Molecular Immunology and Microbiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523, Japan.ORCID 0000-0001-6592-8035
Kiyoshi YasuiDepartment of Molecular Immunology and Microbiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523, Japan.ORCID 0000-0002-7572-7445
Mai IzumidaDepartment of Molecular Immunology and Microbiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523, Japan.
Hideki HayashiDepartment of Molecular Immunology and Microbiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523, Japan.ORCID 0000-0003-4585-6542
Toshifumi MatsuyamaDepartment of Molecular Immunology and Microbiology, Graduate School of Biomedical Sciences, Nagasaki University, Nagasaki 852-8523, Japan.ORCID 0000-0003-1831-4094
Nagasaki University · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Gamma-interferon (γ-IFN) significantly inhibits infection by replication-defective viral vectors derived from the human immunodeficiency virus type 1 (HIV-1) or murine leukemia virus (MLV) but the underlying mechanism remains unclear. Previously we reported that knockdown of γ-IFN-inducible lysosomal thiolreductase (GILT) abrogates the antiviral activity of γ-IFN in TE671 cells but not in HeLa cells, suggesting that other γ-IFN-inducible host factors are involved in its antiviral activity in HeLa cells. We identified cellular factors, the expression of which are induced by γ-IFN in HeLa cells, using a microarray, and analyzed the effects of 11 γ-IFN-induced factors on retroviral vector infection. Our results showed that the exogenous expression of FAT10, IFI6, or IDO1 significantly inhibits both HIV-1- and MLV-based vector infections. The antiviral activity of γ-IFN was decreased in HeLa cells, in which the function of IDO1, IFI6, FAT10, and GILT were simultaneously inhibited. IDO1 is an enzyme that metabolizes an essential amino acid, tryptophan. However, IDO1 did not restrict retroviral vector infection in Atg3-silencing HeLa cells, in which autophagy did not occur. This study found that IDO1, IFI6, FAT10, and GILT are involved in the antiviral activity of γ-IFN, and IDO1 inhibits retroviral infection by inducing autophagy.

Indexed as

HIV-1HIV InfectionsRetroviridae InfectionsAnti-Retroviral AgentsAntiviral AgentsAutophagyHeLa CellsHumansIndoleamine-Pyrrole 2,3,-DioxygenaseInterferon-gammaLeukemia Virus, MurineMitochondrial ProteinsOxidoreductases Acting on Sulfur Group DonorsUbiquitinsAnti-Retroviral AgentsAntiviral AgentsIDO1 protein, humanIFI30 protein, humanIFI6 protein, humanIndoleamine-Pyrrole 2,3,-DioxygenaseInterferon-gammaMitochondrial ProteinsOxidoreductases Acting on Sulfur Group DonorsUBD protein, humanUbiquitinsautophagyFAT10human immunodeficiency virus type 1IDO1IFI6murine leukemia virus

Identifiers

PMID35883685
PMCPMC9323257
OpenAlexW4286214283

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.