Evidence map›Paper›PMID 35889999›Full record

ArticlePathogens (Basel, Switzerland)2022

Practical Validation of United States Centers for Disease Control and Prevention Assays for the Detection of Human Respiratory Syncytial Virus in Pediatric Inpatients in Japan.

Reiko Suwa, Yohei Kume, Miyuki Kawase, Mina Chishiki, Takashi Ono, Sakurako Norito, Ko Sato, Michiko Okamoto, Satoru Kumaki, Yukio Nagai and 5 more

Open access · goldAbstract read
In one paragraph

Article in Pathogens (Basel, Switzerland), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 1 country.

Reiko SuwaDepartment of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama 208-0011, Tokyo, Japan.
Yohei KumeDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.
Miyuki KawaseDepartment of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama 208-0011, Tokyo, Japan.
Mina ChishikiDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.
Takashi OnoDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.
Sakurako NoritoDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.
Ko SatoVirus Research Center, Clinical Research Division, Sendai Medical Center, National Hospital Organization, 2-11-12 Miyagino, Miyagino-ku, Sendai 983-8520, Miyagi, Japan.ORCID 0000-0002-5548-6285
Michiko OkamotoVirus Research Center, Clinical Research Division, Sendai Medical Center, National Hospital Organization, 2-11-12 Miyagino, Miyagino-ku, Sendai 983-8520, Miyagi, Japan.ORCID 0000-0002-3505-5939
Satoru KumakiDepartment of Pediatrics, Sendai Medical Center, National Hospital Organization, 2-11-12 Miyagino, Miyagino-ku, Sendai 980-8575, Miyagi, Japan.
Yukio NagaiNagai Pediatric Clinic, 1-25-10 Miyagino, Miyagino-ku, Sendai 983-0045, Miyagi, Japan.
Mitsuaki HosoyaDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.ORCID 0000-0003-1626-3625
Makoto TakedaDepartment of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama 208-0011, Tokyo, Japan.ORCID 0000-0002-8194-7727
Hidekazu NishimuraVirus Research Center, Clinical Research Division, Sendai Medical Center, National Hospital Organization, 2-11-12 Miyagino, Miyagino-ku, Sendai 983-8520, Miyagi, Japan.ORCID 0000-0002-5681-7971
Koichi HashimotoDepartment of Pediatrics, School of Medicine, Fukushima Medical University, 1 Hikariga-Oka, Fukushima 960-1295, Fukushima, Japan.ORCID 0000-0001-7186-7603
Kazuya ShiratoDepartment of Virology III, National Institute of Infectious Diseases, 4-7-1 Gakuen, Musashimurayama 208-0011, Tokyo, Japan.ORCID 0000-0002-3375-9799
Fukushima Medical University · JPNational Institute of Infectious Diseases · JPSendai Medical Center · JPMiyagi Children's Hospital · JP

Funding

Japan Agency for Medical Research and Development 20fk0108119h0601Japan Agency for Medical Research and Development 21fk0108119j0602Japan Society for the Promotion of Science 20K06441
6 · The paper itself

Abstract

The World Health Organization initiated a global surveillance system for respiratory syncytial virus (RSV) in 2015, and the pilot surveillance is ongoing. The real-time RT-PCR RSV assays (Pan-RSV and duplex assays) developed by the United States Centers for Disease Control and Prevention are applied as the standard assays. To introduce these as standard assays in Japan, their practicality was evaluated using 2261 specimens obtained from pediatric inpatients in Japan, which were collected from 2018 to 2021. Although the Pan-RSV and duplex assays had similar analytical sensitivities, they yielded 630 (27.9%) and 786 (34.8%) RSV-positive specimens, respectively (p < 0.001). Although sequencing analysis showed mismatches in the reverse primer used in the Pan-RSV assay, these mismatches did not affect its analytical sensitivity. The analysis of read numbers of RSV isolates from air−liquid interface culture of human bronchial/tracheal epithelial cells showed that the duplex assay had a greater number of reads than did the Pan-RSV assay. Therefore, the duplex assay has superior detection performance compared with the Pan-RSV assay, but the two assays have similar analytical sensitivities.

Indexed as

global surveillancehuman orthopneumovirushuman respiratory syncytial virus (RSV)real-time RT-PCRsevere acute respiratory infection

Identifiers

PMID35889999
PMCPMC9319774
OpenAlexW4283814916

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.