Evidence map›Paper›PMID 35913912›Full record

ArticlePloS one2022

Cloning of nine glucocorticoid receptor isoforms from the slender African lungfish (Protopterus dolloi).

Yoshinao Katsu, Shin Oana, Xiaozhi Lin, Susumu Hyodo, Laurent Bianchetti, Michael E Baker

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 3 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 3 countries.

Yoshinao KatsuGraduate School of Life Science, Hokkaido University, Sapporo, Japan.ORCID 0000-0003-2625-4626
Shin OanaFaculty of Science, Hokkaido University, Sapporo, Japan.
Xiaozhi LinFaculty of Science, Hokkaido University, Sapporo, Japan.ORCID 0000-0002-8084-8145
Susumu HyodoLaboratory of Physiology, Atmosphere and Ocean Research Institute, University of Tokyo, Chiba, Japan.
Laurent BianchettiInstitute of Genetics and Molecular and Cellular Biology (IGBMC), CNRS UMR 7104-Inserm U1258, Université de Strasbourg, Illkirch, France.
Michael E BakerDivision of Nephrology-Hypertension, Department of Medicine, University of California, San Diego, La Jolla, California, United States of America.ORCID 0000-0003-4387-3269
Hokkaido University · JPCentre National de la Recherche Scientifique · FRThe University of Tokyo · JPUniversity of California San Diego · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We wanted to clone the glucocorticoid receptor (GR) from slender African lungfish (Protopterus dolloi) for comparison to the P. dolloi mineralocorticoid receptor (MR), which we had cloned and were characterizing, as well as for comparison to the GRs from humans, elephant shark and zebrafish. However, although sequencing of the genome of the Australian lungfish (Neoceratodus forsteri), as well as, that of the West African lungfish (Protopterus annectens) were reported in the first three months of 2021, we could not retrieve a GR sequence with a BLAST search of GenBank, when we submitted our research for publication in July 2021. Moreover, we were unsuccessful in cloning the GR from slender African lungfish using a cDNA from the ovary of P. dolloi and PCR primers that had successfully cloned a GR from elephant shark, Xenopus and gar GRs. On October 21, 2021 the nucleotide sequence of West African lungfish (P. annectens) GR was deposited in GenBank. We used this GR sequence to construct PCR primers that successfully cloned the GR from the slender spotted lungfish. Here, we report the sequences of nine P. dolloi GR isoforms and explain the basis for the previous failure to clone a GR from slender African lungfish using PCR primers that cloned the GR from elephant shark, Xenopus and gar. Studies are underway to determine corticosteroid activation of these slender African lungfish GRs.

Indexed as

FishesFish ProteinsReceptors, GlucocorticoidAnimalsCloning, MolecularProtein IsoformsFish ProteinsProtein IsoformsReceptors, Glucocorticoid

Identifiers

PMID35913912
PMCPMC9342798
OpenAlexW4289262143

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.