Evidence map›Paper›PMID 35933019›Full record

ArticleThe Journal of biological chemistry2022

Oxygen-dependent regulation of E3(SCF)ubiquitin ligases and a Skp1-associated JmjD6 homolog in development of the social amoeba Dictyostelium.

Andrew W Boland, Elisabet Gas-Pascual, Braxton L Nottingham, Hanke van der Wel, Nitin G Daniel, M Osman Sheikh, Christopher M Schafer, Christopher M West

Open access · goldAbstract read
In one paragraph

Article in The Journal of biological chemistry, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.0field-weighted citation impact, top 25% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 1 country.

Andrew W BolandDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia, USA; Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA.
Elisabet Gas-PascualDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia, USA; Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia, USA.
Braxton L NottinghamDepartment of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Hanke van der WelDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia, USA; Department of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Nitin G DanielDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia, USA.
M Osman SheikhDepartment of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Christopher M SchaferDepartment of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA.
Christopher M WestDepartment of Biochemistry & Molecular Biology, University of Georgia, Athens, Georgia, USA; Complex Carbohydrate Research Center, University of Georgia, Athens, Georgia, USA; Center for Tropical and Emerging Global Diseases, University of Georgia, Athens, Georgia, USA; Department of Biochemistry & Molecular Biology, University of Oklahoma Health Sciences Center, Oklahoma City, Oklahoma, USA. Electronic address: westcm@uga.edu.
University of Georgia · USUniversity of Oklahoma Health Sciences Center · US

Funding

Transfer of 5R01GM037539 - 22 CYTOSOLIC PROLINE HYDROXYLATION AND GLYCOSYLATIONR01GM037539 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI WEST, CHRISTOPHER M. · 1986 to 2016
$4.4M
Glycoregulation of Skp1 in the cytoplasm and nucleusR01GM084383 · NIGMS · UNIVERSITY OF OKLAHOMA HLTH SCIENCES CTR · PI BLADER, IRA J, WEST, CHRISTOPHER M. · 2009 to 2018
$2.9M
Glycoscience Training ProgramT32GM107004 · NIGMS · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN, HALTIWANGER, ROBERT S. · 2014 to 2021
$1.3M
Identification of F-Box Proteins in ToxoplasmaR21AI149405 · NIAID · STATE UNIVERSITY OF NEW YORK AT BUFFALO · PI BLADER, IRA J, WEST, CHRISTOPHER M. · 2020 to 2021
$442k
NIAID NIH HHS R21 AI149405NIGMS NIH HHS R01 GM037539NIGMS NIH HHS R01 GM084383NIGMS NIH HHS T32 GM107004
6 · The paper itself

Abstract

E3-SCF (Skp1/cullin-1/F-box protein) polyubiquitin ligases activate the proteasomal degradation of over a thousand proteins, but the evolutionary diversification of the F-box protein (FBP) family of substrate receptor subunits has challenged their elucidation in protists. Here, we expand the FBP candidate list in the social amoeba Dictyostelium and show that the Skp1 interactome is highly remodeled as cells transition from growth to multicellular development. Importantly, a subset of candidate FBPs was less represented when the posttranslational hydroxylation and glycosylation of Skp1 was abrogated by deletion of the O

Indexed as

AmoebaDictyosteliumJumonji Domain-Containing Histone DemethylasesSKP Cullin F-Box Protein LigasesS-Phase Kinase-Associated ProteinsOxygenProcollagen-Proline DioxygenaseJumonji Domain-Containing Histone DemethylasesOxygenProcollagen-Proline DioxygenaseSKP Cullin F-Box Protein LigasesS-Phase Kinase-Associated Proteinscellular slime moldE3(SCF)ubiquitin-ligaseF-box proteinglycosylationJumonji Coxygenprolyl hydroxylaseSkp1

Identifiers

PMID35933019
PMCPMC9485057
OpenAlexW4289732144

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.