Evidence map›Paper›PMID 35937300›Full record

ArticleFrontiers in veterinary science2022

Foot-and-mouth disease virus VP1 promotes viral replication by regulating the expression of chemokines and GBP1.

Li Yang, Hong Chen, Liqing Liu, Jingjing Song, Tian Feng, Yihan Li, Chao Shen, Lingbao Kong, Xiu Xin

Open access · goldAbstract read
In one paragraph

Article in Frontiers in veterinary science, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
1.2field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Li YangNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Hong ChenNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Liqing LiuNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Jingjing SongNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Tian FengNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Yihan LiNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Chao ShenState Key Laboratory of Virology, College of Life Sciences, Wuhan University, Wuhan, China.
Lingbao KongNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Xiu XinNanchang City Key Laboratory of Animal Virus and Genetic Engineering, Nanchang, China.
Jiangxi Agricultural University · CNWuhan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Foot-and-mouth disease virus (FMDV) is an acute, highly contagious, and economically destructive pathogen of vesicular disease that affects domestic and wild cloven-hoofed animals. The FMDV VP1 protein is an important part of the nucleocapsid and plays a significant role during FMDV infection. However, the signal pathways mediated by VP1 in the life cycle of FMDV and the related mechanisms are not yet fully understood. Here, we performed RNA-seq to compare gene expression profiles between pCAGGS-HA-VP1 transfected PK-15 cells and pCAGGS-HA (empty vector) transfected PK-15 cells. The results showed 5,571 genes with significantly different expression levels, of which 2,981 were up-regulated and 2,590 were down-regulated. GO enrichment analysis showed that 51 GO terms were significantly enriched in cell components including protein complex, membrane and organelle part. KEGG enrichment analysis showed 11 KEGG pathways were significantly enriched which were mainly related to the immune system, infectious viral disease, and signal transduction. Among the up-regulated genes, the chemokines such as CCL5, CXCL8, and CXCL10 in turn promoted FMDV replication. In contrast, GBP1, an interferon-stimulated gene that was suppressed by VP1 and FMDV, could effectively inhibit FMDV replication. Our research provides a comprehensive overview of the response of host cells to VP1 protein and a basis for further research to understand the roles of VP1 in FMDV infection including the genes involved in FMDV replication.

Indexed as

cytokineFMDV VP1GBP1gene expressionRNA-seqtranscriptome

Identifiers

PMID35937300
PMCPMC9353127
OpenAlexW4286716189

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.