Evidence map›Paper›PMID 35945220›Full record

ArticleNature communications2022

Integrated methylome and phenome study of the circulating proteome reveals markers pertinent to brain health.

Danni A Gadd, Robert F Hillary, Daniel L McCartney, Liu Shi, Aleks Stolicyn, Neil A Robertson, Rosie M Walker, Robert I McGeachan, Archie Campbell, Shen Xueyi and 19 more

Abstract read
In one paragraph

Article in Nature communications, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed, 2 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 2 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Blood DNA Methylation Predicts Long-Term Risk of Dementia in Prospective Cohorts.medRxiv : the preprint server for health sciences · 2026
    Article
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  11. Multi-omics Data Integration.Advances in experimental medicine and biology · 2026
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

29 authors.

Danni A GaddCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0001-6398-5407
Robert F HillaryCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0002-2595-552X
Daniel L McCartneyCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0003-3242-0360
Liu ShiDepartment of Psychiatry, University of Oxford, Oxford, OX3 7JX, UK.
Aleks StolicynDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0002-1147-7539
Neil A RobertsonMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0002-9509-1157
Rosie M WalkerCentre for Clinical Brain Sciences, Chancellor's Building, 49 Little France Crescent, Edinburgh BioQuarter, Edinburgh, EH16 4SB, UK.ORCID 0000-0002-1060-4479
Robert I McGeachanCentre for Discovery Brain Sciences, University of Edinburgh, 1 George Square, Edinburgh, EH8 9JZ, UK.ORCID 0000-0003-1647-8642
Archie CampbellCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0003-0198-5078
Shen XueyiDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0002-0538-4774
Miruna C BarbuDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.
Claire GreenDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0003-2146-8545
Stewart W MorrisCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.
Mathew A HarrisDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0002-1135-4141
Ellen V BackhouseCentre for Clinical Brain Sciences, Chancellor's Building, 49 Little France Crescent, Edinburgh BioQuarter, Edinburgh, EH16 4SB, UK.
Joanna M WardlawCentre for Clinical Brain Sciences, Chancellor's Building, 49 Little France Crescent, Edinburgh BioQuarter, Edinburgh, EH16 4SB, UK.ORCID 0000-0002-9812-6642
J Douglas SteeleDivision of Imaging Science and Technology, Medical School, University of Dundee, Dundee, DD1 9SY, UK.
Diego A OyarzúnSchool of Informatics, University of Edinburgh, Edinburgh, EH8 9AB, UK.ORCID 0000-0002-0381-5278
Graciela Muniz-TerreraCentre for Clinical Brain Sciences, Edinburgh Dementia Prevention, University of Edinburgh, Edinburgh, EH4 2XU, UK.
Craig RitchieCentre for Clinical Brain Sciences, Edinburgh Dementia Prevention, University of Edinburgh, Edinburgh, EH4 2XU, UK.
Alejo Nevado-HolgadoDepartment of Psychiatry, University of Oxford, Oxford, OX3 7JX, UK.ORCID 0000-0001-9276-2720
Tamir ChandraMRC Human Genetics Unit, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.
Caroline HaywardCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0002-9405-9550
Kathryn L EvansCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.
David J PorteousCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK.ORCID 0000-0003-1249-6106
Simon R CoxLothian Birth Cohorts, University of Edinburgh, Edinburgh, EH8 9JZ, UK.ORCID 0000-0003-4036-3642
Heather C WhalleyDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0002-4505-8869
Andrew M McIntoshDivision of Psychiatry, University of Edinburgh, Royal Edinburgh Hospital, Edinburgh, EH10 5HF, UK.ORCID 0000-0002-0198-4588
Riccardo E MarioniCentre for Genomic and Experimental Medicine, Institute of Genetics and Cancer, University of Edinburgh, Edinburgh, EH4 2XU, UK. riccardo.marioni@ed.ac.uk.ORCID 0000-0003-4430-4260

Funding

Evaluating Longitudinal Changes in the Human Structural Connectome in Relation to Cognitive AgingR01AG054628 · NIA · UNIVERSITY OF TEXAS AT AUSTIN · PI TUCKER-DROB, ELLIOT MAX · 2017 to 2021
$2.7M
5/7 Psychiatric Genomics Consortium: Advancing Discovery and ImpactR01MH124873 · NIMH · CARDIFF UNIVERSITY · PI LEWIS, CATHRYN, O'DONOVAN, MICHAEL · 2021 to 2025
$2.6M
Biotechnology and Biological Sciences Research Council BB/W008793/1British Heart Foundation CS/15/5/Chief Scientist Office CZD/16/6Department of HealthMedical Research Council G0701120Medical Research Council G1001245Medical Research Council MC_PC_17209Medical Research Council MC_PC_17215Medical Research Council MC_UU_00007/10Medical Research Council MR/L023784/2Medical Research Council MR/R024065/1Medical Research Council MR/S010351/1Medical Research Council MR/W002388/1Medical Research Council MR/W002566/1NIA NIH HHS R01 AG054628NIMH NIH HHS R01 MH124873Wellcome TrustWellcome Trust 104036/Z/14/ZWellcome Trust 108890/Z/15/ZWellcome Trust 220857/Z/20/ZWellcome Trust 221890/Z/20/ZWellcome Trust 225442/Z/22/Z
6 · The paper itself

Abstract

Characterising associations between the methylome, proteome and phenome may provide insight into biological pathways governing brain health. Here, we report an integrated DNA methylation and phenotypic study of the circulating proteome in relation to brain health. Methylome-wide association studies of 4058 plasma proteins are performed (N = 774), identifying 2928 CpG-protein associations after adjustment for multiple testing. These are independent of known genetic protein quantitative trait loci (pQTLs) and common lifestyle effects. Phenome-wide association studies of each protein are then performed in relation to 15 neurological traits (N = 1,065), identifying 405 associations between the levels of 191 proteins and cognitive scores, brain imaging measures or APOE e4 status. We uncover 35 previously unreported DNA methylation signatures for 17 protein markers of brain health. The epigenetic and proteomic markers we identify are pertinent to understanding and stratifying brain health.

Indexed as

Genome-Wide Association StudyProteomeBiomarkersBrainCpG IslandsDNA MethylationEpigenomeProteomicsBiomarkersProteome

Identifiers

PMID35945220
PMCPMC9363452

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.