Evidence map›Paper›PMID 35947871›Full record

ArticleThe Journal of heredity2022

Reference genome for the California ribbed mussel, Mytilus californianus, an ecosystem engineer.

Lisa X Paggeot, Melissa B DeBiasse, Merly Escalona, Colin Fairbairn, Mohan P A Marimuthu, Oanh Nguyen, Ruta Sahasrabudhe, Michael N Dawson

Abstract read
In one paragraph

Article in The Journal of heredity, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed.

  1. Cell-cycle genes in the mussel Mytilus galloprovincialis are cued by aerial heat stress in a fluctuating tidal environment.Journal of comparative physiology. B, Biochemical, systemic, and environmental physiology · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Lisa X PaggeotDepartment of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.ORCID 0000-0001-9779-0157
Melissa B DeBiasseDepartment of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.ORCID 0000-0003-0404-7212
Merly EscalonaDepartment of Biomolecular Engineering, University of California Santa Cruz, Santa Cruz, CA 95064, United States.ORCID 0000-0003-0213-4777
Colin FairbairnEcology & Evolutionary Biology Department, University of Santa Cruz, 1156 High St, Santa Cruz, CA 95064, United States.
Mohan P A MarimuthuDNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.ORCID 0000-0001-6121-3286
Oanh NguyenDNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.ORCID 0000-0003-1492-2084
Ruta SahasrabudheDNA Technologies and Expression Analysis Core Laboratory, Genome Center, Department of Biological Sciences, University of California-Davis, Davis, CA 95616, United States.ORCID 0000-0002-3285-6845
Michael N DawsonDepartment of Life & Environmental Sciences, University of California, Merced, Merced, CA 95343, United States.ORCID 0000-0001-7927-8395

Funding

Pacific Biosciences PacBio RS Single Molecule Real Time SequencerS10OD018174 · OD · UNIVERSITY OF CALIFORNIA BERKELEY · PI ROKHSAR, DANIEL SOLEYMAN · 2014 to 2014
$600k
Acquisition of Covaris E220 and Sciclone G3 systems for high throughput sequencinS10OD010786 · OD · UNIVERSITY OF CALIFORNIA AT DAVIS · PI COMAI, LUCA · 2012 to 2012
$311k
NIH HHS 1S10OD010786-01NIH HHS S10 OD010786NIH HHS S10 OD018174
6 · The paper itself

Abstract

The California ribbed mussel, Mytilus californianus, is an ecosystem engineer crucial for the survival of many marine species inhabiting the intertidal zone of California. Here, we describe the first reference genome for M. californianus and compare it to previously published genomes from three other Mytilus species: M. edulis, M. coruscus, and M. galloprovincialis. The M. californianus reference genome is 1.65 Gb in length, with N50 sequence length of 118 Mb, and an estimated 86.0% complete single copy genes. Compared with the other three Mytilus species, the M. californianus genome assembly is the longest, has the highest N50 value, and the highest percentage complete single copy genes. This high-quality genome assembly provides a foundation for population genetic analyses that will give insight into future conservation work along the coast of California.

Indexed as

MytilusAnimalsCaliforniaEcosystemBivalviaCalifornia Conservation Genomics Project (CCGP)ecosystem engineermarine invertebratemusselrocky intertidal

Identifiers

PMID35947871
PMCPMC9710001

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.