Evidence map›Paper›PMID 35948399›Full record

ArticleJournal of immunology (Baltimore, Md. : 1950)2022

The RAG1 Ubiquitin Ligase Domain Stimulates Recombination of TCRβ and TCRα Genes and Influences Development of αβ T Cell Lineages.

Thomas N Burn, Charline Miot, Scott M Gordon, Erica J Culberson, Tamir Diamond, Portia A Kreiger, Katharina E Hayer, Anamika Bhattacharyya, Jessica M Jones, Craig H Bassing and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in Journal of immunology (Baltimore, Md. : 1950), 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 8 citations in OpenAlex.

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  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Thomas N BurnPenn Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.
Charline MiotDepartment of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0002-4586-1061
Scott M GordonPenn Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.ORCID 0000-0003-1028-1953
Erica J CulbersonDepartment of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA.
Tamir DiamondPenn Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA.ORCID 0000-0002-1904-5351
Portia A KreigerDepartment of Pathology and Laboratory Medicine, The Children's Hospital of Philadelphia, Philadelphia, PA.
Katharina E HayerDepartment of Biomedical and Health Bioinformatics, The Children's Hospital of Philadelphia, Philadelphia, PA.ORCID 0000-0002-1463-3111
Anamika BhattacharyyaDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington, DC; and.ORCID 0000-0001-8858-3308
Jessica M JonesDepartment of Biochemistry and Molecular & Cellular Biology, Georgetown University, Washington, DC; and.
Craig H BassingPenn Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA; bassing@chop.edu behrens@chop.edu.ORCID 0000-0003-1703-0786
Edward M BehrensPenn Institute for Immunology, Perelman School of Medicine at the University of Pennsylvania, Philadelphia, PA; bassing@chop.edu behrens@chop.edu.
Children's Hospital of Philadelphia · USGeorgetown University · US

Funding

IL-33 Blockade as a Novel Therapeutic for T-cell Mediated Hypercytokinemia SyndromesR01AI121250 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BEHRENS, EDWARD M, KAMBAYASHI, TAKU · 2016 to 2020
$3.0M
The Opposing Roles of IL-10 and IFN-gamma in Macrophage Activation SyndromeR01HL112836 · NHLBI · CHILDREN'S HOSP OF PHILADELPHIA · PI BEHRENS, EDWARD M · 2013 to 2017
$2.1M
DNA Double Strand Break Mediated Feedback Inhibition of V(D)J RecombinationR01AI112621 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BASSING, CRAIG H · 2015 to 2019
$1.9M
Functions for novel IL-15-responsive macrophages in the uterus during pregnancyK08AI151265 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI GORDON, SCOTT MICHAEL · 2021 to 2025
$1.0M
Exploring the Role of RAG1 in Post-transcriptional Gene RegulationR21AI135435 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BASSING, CRAIG H · 2019 to 2020
$484k
DNA Double Strand Break Mediated Feedback Inhibition of V(D)J RecombinationR56AI112621 · NIAID · CHILDREN'S HOSP OF PHILADELPHIA · PI BASSING, CRAIG H · 2014 to 2014
$420k
Analysis of Lymphocyte Development in Mice Expressing E3-Deficient RAG1 AllelesR03AI097611 · NIAID · GEORGETOWN UNIVERSITY · PI JONES, JESSICA MORGAN · 2012 to 2013
$149k
NHLBI NIH HHS R01 HL112836NIAID NIH HHS K08 AI151265NIAID NIH HHS R01 AI112621NIAID NIH HHS R01 AI121250NIAID NIH HHS R03 AI097611NIAID NIH HHS R21 AI135435NIAID NIH HHS R56 AI112621
6 · The paper itself

Abstract

RAG1/RAG2 (RAG) endonuclease-mediated assembly of diverse lymphocyte Ag receptor genes by V(D)J recombination is critical for the development and immune function of T and B cells. The RAG1 protein contains a ubiquitin ligase domain that stabilizes RAG1 and stimulates RAG endonuclease activity in vitro. We report in this study that mice with a mutation that inactivates the Rag1 ubiquitin ligase in vitro exhibit decreased rearrangements and altered repertoires of TCRβ and TCRα genes in thymocytes and impaired thymocyte developmental transitions that require the assembly and selection of functional TCRβ and/or TCRα genes. These Rag1 mutant mice present diminished positive selection and superantigen-mediated negative selection of conventional αβ T cells, decreased genesis of invariant NK T lineage αβ T cells, and mature CD4

Indexed as

Homeodomain ProteinsReceptors, Antigen, T-Cell, alpha-betaUbiquitinAnimalsCell LineageEndonucleasesLigasesMiceSuperantigensV(D)J RecombinationEndonucleasesHomeodomain ProteinsLigasesRAG-1 proteinReceptors, Antigen, T-Cell, alpha-betaSuperantigensUbiquitin

Identifiers

PMID35948399
PMCPMC9492648
OpenAlexW4296793618

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.