Evidence map›Paper›PMID 35960866›Full record

ArticleACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine2022

Supervised Pretraining through Contrastive Categorical Positive Samplings to Improve COVID-19 Mortality Prediction.

Tingyi Wanyan, Mingquan Lin, Eyal Klang, Kartikeya M Menon, Faris F Gulamali, Ariful Azad, Yiye Zhang, Ying Ding, Zhangyang Wang, Fei Wang and 2 more

Open access · greenAbstract read
In one paragraph

Article in ACM-BCB ... ... : the ... ACM Conference on Bioinformatics, Computational Biology and Biomedicine. ACM Conference on Bioinformatics, Computational Biology and Biomedicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed, 1 pooled it
1.1field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 1 synthesis or guideline pooled it, 8 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 1 country.

Tingyi WanyanPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Mingquan LinPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Eyal KlangIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Kartikeya M MenonIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Faris F GulamaliIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Ariful AzadIntelligent Systems Engineering, Indiana University, Bloomington, Bloomington, IN, USA.
Yiye ZhangPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Ying DingSchool of Information, University of Texus Austin, Austin, TX, USA.
Zhangyang WangElectrical and Computer Engineering, University of Texus Austin, Austin, TX, USA.
Fei WangPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Benjamin GlicksbergIcahn School of Medicine at Mount Sinai, New York, NY, USA.
Yifan PengPopulation Health Sciences, Weill Cornell Medicine, New York, NY, USA.
Icahn School of Medicine at Mount Sinai · USCornell University · USWeill Cornell Medicine · USIndiana University · US

Funding

A framework to enhance radiology structured report by invoking NLP and DL: Models and ApplicationsR00LM013001 · NLM · WEILL MEDICAL COLL OF CORNELL UNIV · PI PENG, YIFAN · 2020 to 2022
$710k
NLM NIH HHS R00 LM013001
6 · The paper itself

Abstract

Clinical EHR data is naturally heterogeneous, where it contains abundant sub-phenotype. Such diversity creates challenges for outcome prediction using a machine learning model since it leads to high intra-class variance. To address this issue, we propose a supervised pre-training model with a unique embedded k-nearest-neighbor positive sampling strategy. We demonstrate the enhanced performance value of this framework theoretically and show that it yields highly competitive experimental results in predicting patient mortality in real-world COVID-19 EHR data with a total of over 7,000 patients admitted to a large, urban health system. Our method achieves a better AUROC prediction score of 0.872, which outperforms the alternative pre-training models and traditional machine learning methods. Additionally, our method performs much better when the training data size is small (345 training instances).

Indexed as

Intra-class variancemortality predictionPre-trainingSelf-supervised LearningSub-phenotypeSupervised Contrastive Learning

Identifiers

PMID35960866
PMCPMC9365529
OpenAlexW4288421332

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.