Evidence mapPaperPMID 35965467Full record

ArticlePhilosophical transactions. Series A, Mathematical, physical, and engineering sciences2022

Visualization for epidemiological modelling: challenges, solutions, reflections and recommendations.

Jason Dykes, Alfie Abdul-Rahman, Daniel Archambault, Benjamin Bach, Rita Borgo, Min Chen, Jessica Enright, Hui Fang, Elif E Firat, Euan Freeman and 23 more

Erratum issuedAbstract read
In one paragraph

Article in Philosophical transactions. Series A, Mathematical, physical, and engineering sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. An algebraic framework for structured epidemic modelling.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022
    Article
  2. Estimation of age-stratified contact rates during the COVID-19 pandemic using a novel inference algorithm.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022
    Article
  3. Visualization for epidemiological modelling: challenges, solutions, reflections and recommendations.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022
    Article
  4. Technical challenges of modelling real-life epidemics and examples of overcoming these.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2022
    Article
  5. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

33 authors.

Jason DykesCity, University of London, London, UK.ORCID 0000-0002-8096-5763
Alfie Abdul-RahmanKing's College London, London, UK.ORCID 0000-0002-6257-876X
Daniel ArchambaultSwansea University, Swansea, UK.
Benjamin BachUniversity of Edinburgh, Edinburgh, UK.ORCID 0000-0002-9201-7744
Rita BorgoKing's College London, London, UK.ORCID 0000-0003-2875-6793
Min ChenUniversity of Oxford, Oxford, UK.ORCID 0000-0001-5320-5729
Jessica EnrightUniversity of Glasgow, Glasgow, UK.
Hui FangLoughborough University, Loughborough, UK.
Elif E FiratUniversity of Nottingham, Nottingham, UK.ORCID 0000-0001-9497-7928
Euan FreemanUniversity of Glasgow, Glasgow, UK.ORCID 0000-0002-6586-6951
Tuna GönenUniversity of Oxford, Oxford, UK.ORCID 0000-0002-0938-2522
Claire HarrisBiomathematics and Statistics Scotland, Edinburgh, UK.ORCID 0000-0003-0852-2340
Radu JianuCity, University of London, London, UK.ORCID 0000-0002-5834-2658
Nigel W JohnUniversity of Chester, Chester, UK.ORCID 0000-0001-5153-182X
Saiful KhanUniversity of Oxford, Oxford, UK.
Andrew LahiffUKAEA, Abingdon, UK.ORCID 0000-0002-2785-4116
Robert S LarameeUniversity of Nottingham, Nottingham, UK.
Louise MatthewsUniversity of Glasgow, Glasgow, UK.ORCID 0000-0003-4420-8367
Sibylle MohrUniversity of Glasgow, Glasgow, UK.ORCID 0000-0002-9089-6327
Phong H NguyenUniversity of Oxford, Oxford, UK.
Alma A M RahatSwansea University, Swansea, UK.
Richard ReeveUniversity of Glasgow, Glasgow, UK.ORCID 0000-0003-2589-8091
Panagiotis D RitsosBangor University, Bangor, UK.ORCID 0000-0001-9308-3885
Jonathan C RobertsBangor University, Bangor, UK.ORCID 0000-0001-7718-3181
Aidan SlingsbyCity, University of London, London, UK.ORCID 0000-0003-3941-553X
Ben SwallowUniversity of Glasgow, Glasgow, UK.ORCID 0000-0002-0227-2160
Thomas Torsney-WeirSwansea University, Swansea, UK.ORCID 0000-0002-0329-2198
Cagatay TurkayUniversity of Warwick, Coventry, UK.ORCID 0000-0001-6788-251X
Robert TurnerUniversity of Sheffield, Sheffield, UK.
Franck P VidalBangor University, Bangor, UK.ORCID 0000-0002-2768-4524
Qiru WangUniversity of Nottingham, Nottingham, UK.ORCID 0000-0003-3397-308X
Jo WoodCity, University of London, London, UK.ORCID 0000-0001-9270-247X
Kai XuMiddlesex University, London, UK.ORCID 0000-0003-2242-5440

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

We report on an ongoing collaboration between epidemiological modellers and visualization researchers by documenting and reflecting upon knowledge constructs-a series of ideas, approaches and methods taken from existing visualization research and practice-deployed and developed to support modelling of the COVID-19 pandemic. Structured independent commentary on these efforts is synthesized through iterative reflection to develop: evidence of the effectiveness and value of visualization in this context; open problems upon which the research communities may focus; guidance for future activity of this type and recommendations to safeguard the achievements and promote, advance, secure and prepare for future collaborations of this kind. In describing and comparing a series of related projects that were undertaken in unprecedented conditions, our hope is that this unique report, and its rich interactive supplementary materials, will guide the scientific community in embracing visualization in its observation, analysis and modelling of data as well as in disseminating findings. Equally we hope to encourage the visualization community to engage with impactful science in addressing its emerging data challenges. If we are successful, this showcase of activity may stimulate mutually beneficial engagement between communities with complementary expertise to address problems of significance in epidemiology and beyond. See https://ramp-vis.github.io/RAMPVIS-PhilTransA-Supplement/. This article is part of the theme issue 'Technical challenges of modelling real-life epidemics and examples of overcoming these'.

Indexed as

COVID-19PandemicsHumanscomputational notebooksepidemiological modellingvisual analyticsvisual designvisualization

Identifiers

PMID35965467
PMCPMC9376715

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.