Evidence map›Paper›PMID 35986497›Full record

ArticleThe Plant journal : for cell and molecular biology2022

The landscape of Chlamydomonas histone H3 lysine 4 methylation reveals both constant features and dynamic changes during the diurnal cycle.

Daniela Strenkert, Asli Yildirim, Juying Yan, Yuko Yoshinaga, Matteo Pellegrini, Ronan C O'Malley, Sabeeha S Merchant, James G Umen

Open access · greenAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 19 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 3 institutions in 1 country.

Daniela StrenkertCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, CA, 94720, USA.ORCID 0000-0002-3420-1332
Asli YildirimInstitute of Quantitative and Computational Biosciences, University of California, Los Angeles, CA, 90095, USA.
Juying YanDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Yuko YoshinagaDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Matteo PellegriniInstitute of Quantitative and Computational Biosciences, University of California, Los Angeles, CA, 90095, USA.
Ronan C O'MalleyDOE Joint Genome Institute, Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Sabeeha S MerchantCalifornia Institute for Quantitative Biosciences, University of California, Berkeley, CA, 94720, USA.ORCID 0000-0002-2594-509X
James G UmenDonald Danforth Plant Science Center, St. Louis, MO, 63132, USA.
QB3 · USLawrence Berkeley National Laboratory · USDonald Danforth Plant Science Center · US

Funding

Stochastic hybrid systems approach to uncovering cell-size control mechanisms R01GM126557 · NIGMS · UNIVERSITY OF DELAWARE · PI SINGH, ABHYUDAI · 2017 to 2019
$675k
NIGMS NIH HHS R01 GM126557
6 · The paper itself

Abstract

Chromatin modifications are epigenetic regulatory features with major roles in various cellular events, yet they remain understudied in algae. We interrogated the genome-wide distribution pattern of mono- and trimethylated histone H3 lysine 4 (H3K4) using chromatin-immunoprecipitation followed by deep-sequencing (ChIP-seq) during key phases of the Chlamydomonas cell cycle: early G

Indexed as

ChlamydomonasRNA, Long NoncodingChromatinCytosineDNA MethylationHistonesLysineChromatinCytosineHistonesLysineRNA, Long NoncodingDNA methylationmeiotic genesnon-poly-adenylated transcriptsreplication-dependent histones

Identifiers

PMID35986497
PMCPMC9588799
OpenAlexW4294104474

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.