Evidence map›Paper›PMID 36012427›Full record

ArticleInternational journal of molecular sciences2022

Genome-Wide Super-Enhancer-Based Analysis: Identification of Prognostic Genes in Oral Squamous Cell Carcinoma.

Tomoaki Saito, Shunichi Asai, Nozomi Tanaka, Nijiro Nohata, Chikashi Minemura, Ayaka Koma, Naoko Kikkawa, Atsushi Kasamatsu, Toyoyuki Hanazawa, Katsuhiro Uzawa and 1 more

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Super-enhancers complexes zoom in transcription in cancer.Journal of experimental & clinical cancer research : CR · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 2 institutions in 1 country.

Tomoaki SaitoDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.
Shunichi AsaiDepartment of Functional Genomics, Chiba University Graduate School of Medicine, Chiba 260-8670, Japan.
Nozomi TanakaDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.
Nijiro NohataMSD K.K., Tokyo 102-8667, Japan.ORCID 0000-0002-6816-2984
Chikashi MinemuraDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.ORCID 0000-0001-8539-6240
Ayaka KomaDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.
Naoko KikkawaDepartment of Functional Genomics, Chiba University Graduate School of Medicine, Chiba 260-8670, Japan.
Atsushi KasamatsuDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.ORCID 0000-0002-8054-2584
Toyoyuki HanazawaDepartment of Otorhinolaryngology/Head and Neck Surgery, Chiba University Graduate School of Medicine, Chiba 260-8670, Japan.ORCID 0000-0001-9721-5662
Katsuhiro UzawaDepartment of Oral Science, Graduate School of Medicine, Chiba University, Chiba 260-8670, Japan.ORCID 0000-0002-7036-0859
Naohiko SekiDepartment of Functional Genomics, Chiba University Graduate School of Medicine, Chiba 260-8670, Japan.ORCID 0000-0003-4731-7956
Chiba University · JPMSD K.K. (Japan) · JP

Funding

JSPS KAKENHI 20H03883
6 · The paper itself

Abstract

Advanced-stage oral squamous cell carcinoma (OSCC) patients are treated with combination therapies, such as surgery, radiation, chemotherapy, and immunotherapy. However, OSCC cells acquire resistance to these treatments, resulting in local recurrence and distant metastasis. The identification of genes involved in drug resistance is essential for improving the treatment of this disease. In this study, we applied chromatin immunoprecipitation sequencing (ChIP-Seq) to profile active enhancers. For that purpose, we used OSCC cell lines that had been exposed to cetuximab for a prolonged period. In total, 64 chromosomal loci were identified as active super-enhancers (SE) according to active enhancer marker histone H3 lysine 27 acetylation (H3K27ac) ChIP-Seq. In addition, a total of 131 genes were located in SE regions, and 34 genes were upregulated in OSCC tissues by TCGA-OSCC analysis. Moreover, high expression of four genes (

Indexed as

Carcinoma, Squamous CellHead and Neck NeoplasmsMouth NeoplasmsCell Line, TumorCetuximabGene Expression Regulation, NeoplasticHumansPrognosisSquamous Cell Carcinoma of Head and NeckCetuximabC9orf89CENPAchromatin immunoprecipitation sequencingH3K27acoral squamous cell carcinomaPISDsuper-enhancersTCGA-OSCCTRAF2

Identifiers

PMID36012427
PMCPMC9409227
OpenAlexW4292071188

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.