Evidence map›Paper›PMID 36016282›Full record

ArticleViruses2022

The Virus-Induced Upregulation of the miR-183/96/182 Cluster and the FoxO Family Protein Members Are Not Required for Efficient Replication of HSV-1.

Andreja Zubković, Ines Žarak, Ivana Ratkaj, Filip Rokić, Maja Jekić, Marina Pribanić Matešić, Ricardo Lebrón, Cristina Gómez-Martín, Berislav Lisnić, Vanda Juranić Lisnić and 5 more

Open access · goldAbstract read
In one paragraph

Article in Viruses, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 4 institutions in 3 countries.

Andreja ZubkovićDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.
Ines ŽarakDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.
Ivana RatkajDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.ORCID 0000-0002-5813-0487
Filip RokićLaboratory for Advanced Genomics, Rudjer Boskovic Institute, 10000 Zagreb, Croatia.
Maja JekićDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.
Marina Pribanić MatešićDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.ORCID 0000-0003-0355-1572
Ricardo LebrónGenetics Department & Biotechnology Institute, Biomedical Research Center (CIBM), University of Granada, 18100 Granada, Spain.ORCID 0000-0002-5120-843X
Cristina Gómez-MartínGenetics Department & Biotechnology Institute, Biomedical Research Center (CIBM), University of Granada, 18100 Granada, Spain.ORCID 0000-0003-0866-4103
Berislav LisnićCenter for Proteomics, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia.
Vanda Juranić LisnićCenter for Proteomics, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia.ORCID 0000-0002-7182-8927
Stipan JonjićCenter for Proteomics, Faculty of Medicine, University of Rijeka, 51000 Rijeka, Croatia.
Dongli PanDepartment of Medical Microbiology and Parasitology, Zhejiang University School of Medicine, Hangzhou 310058, China.ORCID 0000-0002-0421-6242
Oliver VugrekLaboratory for Advanced Genomics, Rudjer Boskovic Institute, 10000 Zagreb, Croatia.
Michael HackenbergGenetics Department & Biotechnology Institute, Biomedical Research Center (CIBM), University of Granada, 18100 Granada, Spain.ORCID 0000-0003-2248-3114
Igor JurakDepartment of Biotechnology, University of Rijeka, 51000 Rijeka, Croatia.ORCID 0000-0002-7271-2643
University of Rijeka · HRUniversidad de Granada · ESRuđer Bošković Institute · HRZhejiang University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Herpes simplex virus 1 (HSV-1) expresses a large number of miRNAs, and their function is still not completely understood. In addition, HSV-1 has been found to deregulate host miRNAs, which adds to the complexity of the regulation of efficient virus replication. In this study, we comprehensively addressed the deregulation of host miRNAs by massive-parallel sequencing. We found that only miRNAs expressed from a single cluster, miR-183/96/182, are reproducibly deregulated during productive infection. These miRNAs are predicted to regulate a great number of potential targets involved in different cellular processes and have only 33 shared targets. Among these, members of the FoxO family of proteins were identified as potential targets for all three miRNAs. However, our study shows that the upregulated miRNAs do not affect the expression of FoxO proteins, moreover, these proteins were upregulated in HSV-1 infection. Furthermore, we show that the individual FoxO proteins are not required for efficient HSV-1 replication. Taken together, our results indicate a complex and redundant response of infected cells to the virus infection that is efficiently inhibited by the virus.

Indexed as

Herpes SimplexHerpesvirus 1, HumanMicroRNAsHumansUp-RegulationVirus ReplicationMicroRNAsMIRN183 microRNA, humanFoxOherpes simplex virus 1HSV-1miRNAvirus-host interaction

Identifiers

PMID36016282
PMCPMC9414244
OpenAlexW4288490744

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.