Evidence map›Paper›PMID 36016494›Full record

ArticleAutophagy2023

Transcriptomic analysis of pathways associated with ITGAV/alpha(v) integrin-dependent autophagy in human B cells.

Virginia Muir, Sara Sagadiev, Shuozhi Liu, Ursula Holder, Andrea M Armendariz, Emmaline Suchland, Iana Meitlis, Nathan Camp, Natalia Giltiay, Jenny M Tam and 6 more

Open access · hybridAbstract read
In one paragraph

Article in Autophagy, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.6field-weighted citation impact, top 17% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 1 country.

Virginia MuirImmunology Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Sara SagadievImmunology Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Shuozhi LiuCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Ursula HolderCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Andrea M ArmendarizCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Emmaline SuchlandCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Iana MeitlisCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Nathan CampCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Natalia GiltiayDepartments of Rheumatology, University of Washington, Seattle, WA, USA.
Jenny M TamWyss Institute for Biologically Inspired Engineering, Harvard University, Boston, MA, USA.
Ethan C GarnerDepartment of Molecular and Cell Biology, Harvard University, Cambridge, MA, USA.
Carl N WivaggDepartment of Molecular and Cell Biology, Harvard University, Cambridge, MA, USA.
Donna ShowsImmunology Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Richard G JamesCenter for Immunity and Immunotherapies, Seattle Children's Research Institute, Seattle, WA, USA.
Adam Lacy-HulbertImmunology Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Mridu AcharyaImmunology Program, Benaroya Research Institute at Virginia Mason, Seattle, WA, USA.
Virginia Mason Medical Center · USHarvard University · USUniversity of Washington · USBenaroya Research Institute

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Macroautophagy/autophagy proteins have been linked with the development of immune-mediated diseases including lupus, but the mechanisms for this are unclear due to the complex roles of these proteins in multiple immune cell types. We have previously shown that a form of noncanonical autophagy induced by ITGAV/alpha(v) integrins regulates B cell activation by viral and self-antigens, in mice. Here, we investigate the involvement of this pathway in B cells from human tissues. Our data reveal that autophagy is specifically induced in the germinal center and memory B cell subpopulations of human tonsils and spleens. Transcriptomic analysis show that the induction of autophagy is related to unique aspects of activated B cells such as mitochondrial metabolism. To understand the function of ITGAV/alpha(v) integrin-dependent autophagy in human B cells, we used CRISPR-mediated knockdown of autophagy genes. Integrating data from primary B cells and knockout cells, we found that ITGAV/alpha(v)-dependent autophagy limits activation of specific pathways related to B cell responses, while promoting others. These data provide new mechanistic links for autophagy and B-cell-mediated immune dysregulation in diseases such as lupus.

Indexed as

AutophagyIntegrin alphaVAnimalsB-LymphocytesHumansMiceMitochondriaTranscriptomeIntegrin alphaVAutophagyB cellscell-cyclemitophagynon-canonical autophagyTLR signaling

Identifiers

PMID36016494
PMCPMC9980515
OpenAlexW4293224285

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.