Evidence map›Paper›PMID 36016928›Full record

ArticleFrontiers in immunology2022

The cytoplasmic LSm1-7 and nuclear LSm2-8 complexes exert opposite effects on Hepatitis B virus biosynthesis and interferon responses.

Naimur Rahman, Jiazeng Sun, Zhili Li, Aryamav Pattnaik, Rodrigo Mohallem, Mengbo Wang, Majid Kazemian, Uma K Aryal, Ourania Andrisani

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.9field-weighted citation impact, top 29% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 2 institutions in 1 country.

Naimur RahmanDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN, United States.
Jiazeng SunDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN, United States.
Zhili LiDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN, United States.
Aryamav PattnaikPurdue Center for Cancer Research, Purdue University, West Lafayette, IN, United States.
Rodrigo MohallemPurdue Proteomics Facility, Bindley Bioscience Center, Purdue University, West Lafayette, IN, United States.
Mengbo WangPurdue Center for Cancer Research, Purdue University, West Lafayette, IN, United States.
Majid KazemianPurdue Center for Cancer Research, Purdue University, West Lafayette, IN, United States.
Uma K AryalPurdue Proteomics Facility, Bindley Bioscience Center, Purdue University, West Lafayette, IN, United States.
Ourania AndrisaniDepartment of Basic Medical Sciences, Purdue University, West Lafayette, IN, United States.
Purdue University West Lafayette · USCenter for Cancer Research · US

Funding

Transgenic Mouse Core Facility Shared Resource (TMCF-SR)P30CA023168 · NCI · PURDUE UNIVERSITY WEST LAFAYETTE · PI Andrea L Kasinski · 1985 to 2026
$43.4M
INDIANA CLINICAL AND TRANSLATIONAL SCIENCE INSTITUTE (UL1): BPCAUL1RR025761 · NCRR · INDIANA UNIVERSITY INDIANAPOLIS · PI SHEKHAR, ANANTHA · 2008 to 2011
$21.0M
Role of CREB/ATF Proteins in Hepatocyte Growth ControlR01DK044533 · NIDDK · PURDUE UNIVERSITY WEST LAFAYETTE · PI ANDRISANI, OURANIA M. · 1999 to 2021
$5.1M
Joint submission for administrative supplement proposal: HIPAA aligned storage and computing solutionR35GM138283 · NIGMS · PURDUE UNIVERSITY · PI KAZEMIAN, MAJID · 2020 to 2024
$2.0M
NCI NIH HHS P30 CA023168NCRR NIH HHS UL1 RR025761NIDDK NIH HHS R01 DK044533NIGMS NIH HHS R35 GM138283
6 · The paper itself

Abstract

Despite many studies on host or viral gene expression, how the cellular proteome responds to internal or external cues during the infection process remains unclear. In this study, we used a Hepatitis B Virus (HBV) replication model and performed proteomic analyses to understand how HBV evades innate immunity as a function of cell cycle progression. Specifically, we performed proteomic analyses of HBV-replicating cells in G1/S and G2/M phases, as a function of IFN-α treatment. We identified that the conserved LSm (Like-Sm1-8) proteins were differentially regulated in HBV replicating cells treated with IFN-α. Specifically, in G2/M phase, IFN-α increased protein level of LSm1, the unique subunit of cytoplasmic LSm1-7 complex involved in mRNA decay. By contrast, IFN-α decreased LSm8, the unique subunit of nuclear LSm2-8 complex, a chaperone of U6 spliceosomal RNA, suggesting the cytoplasmic LSm1-7 complex is antiviral, whereas the nuclear LSm2-8 complex is pro-viral. In HBV replication and infection models, siRNA-mediated knockdown of LSm1 increased all viral RNAs. Conversely, LSm8 knockdown reduced viral RNA levels, dependent on

Indexed as

Hepatitis B virusRNA, ViralAntiviral AgentsInterferon-alphaProteomicsRNA-Binding ProteinsAntiviral AgentsInterferon-alphaRNA-Binding ProteinsRNA, ViralCp028Hepatitis B Virus (HBV)LSm1-7 and LSm2-8 complexesMethylated RNA immunoprecipitation (MeRIP)N6-adenosine methylation (m6A)

Identifiers

PMID36016928
PMCPMC9396650
OpenAlexW4292451901

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.