Evidence map›Paper›PMID 36037385›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2022

Adaptive exchange sustains cullin-RING ubiquitin ligase networks and proper licensing of DNA replication.

Yaru Zhang, Marco Jost, Ryan A Pak, Daniel Lu, Jing Li, Brett Lomenick, Spiros D Garbis, Chi-Ming Li, Jonathan S Weissman, James Russell Lipford and 1 more

Open access · greenAbstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
1.9field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 23 citations in OpenAlex.

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  18. Review: A silent concert in developing plants: Dynamic assembly of cullin-RING ubiquitin ligases.Plant science : an international journal of experimental plant biology · 2023
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 3 institutions in 1 country.

Yaru ZhangOncology Research, Amgen Research, Thousand Oaks, CA 91320.
Marco JostDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Ryan A PakDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
Daniel LuGenome Analysis Unit, Amgen Research, South San Francisco, CA, 94080.
Jing LiOncology Research, Amgen Research, Thousand Oaks, CA 91320.
Brett LomenickProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125.
Spiros D GarbisProteome Exploration Laboratory, Beckman Institute, California Institute of Technology, Pasadena, CA 91125.
Chi-Ming LiGenome Analysis Unit, Amgen Research, South San Francisco, CA, 94080.
Jonathan S WeissmanDepartment of Cellular and Molecular Pharmacology, University of California, San Francisco, CA 94158.
James Russell LipfordOncology Research, Amgen Research, Thousand Oaks, CA 91320.
Raymond J DeshaiesAmgen Research, Thousand Oaks, CA 91320.ORCID 0000-0002-3671-9354
Amgen (United States) · USCalifornia Institute of Technology · USQB3 · US

Funding

Deciphering the logic of glycolipid signaling at the host-microbiome interfaceR00GM130964 · NIGMS · HARVARD MEDICAL SCHOOL · PI JOST, MARCO · 2021 to 2023
$747k
Deciphering the logic of glycolipid signaling at the host-microbiome interfaceK99GM130964 · NIGMS · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI JOST, MARCO · 2019 to 2020
$200k
Howard Hughes Medical InstituteNIGMS NIH HHS K99 GM130964NIGMS NIH HHS R00 GM130964
6 · The paper itself

Abstract

Cop9 signalosome (CSN) regulates the function of cullin-RING E3 ubiquitin ligases (CRLs) by deconjugating the ubiquitin-like protein NEDD8 from the cullin subunit. To understand the physiological impact of CSN function on the CRL network and cell proliferation, we combined quantitative mass spectrometry and genome-wide CRISPR interference (CRISPRi) and CRISPR activation (CRISPRa) screens to identify factors that modulate cell viability upon inhibition of CSN by the small molecule CSN5i-3. CRL components and regulators strongly modulated the antiproliferative effects of CSN5i-3, and in addition we found two pathways involved in genome integrity, SCF

Indexed as

DNA ReplicationUbiquitin-Protein LigasesAzepinesCell SurvivalCOP9 Signalosome ComplexCullin ProteinsImidazolesNEDD8 ProteinPyrazolesAzepinesCOP9 Signalosome ComplexCSN5i-3Cullin ProteinsImidazolesNEDD8 ProteinPyrazolesUbiquitin-Protein LigasesCop9 signalosomeCRISPR screenCSN5i-3deneddylationDNA replication

Identifiers

PMID36037385
PMCPMC9456757
OpenAlexW4293485808

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.