Evidence map›Paper›PMID 36044476›Full record

ArticlePloS one2022

Characterisation of a soil MINPP phytase with remarkable long-term stability and activity from Acinetobacter sp.

Gregory D Rix, Colleen Sprigg, Hayley Whitfield, Andrew M Hemmings, Jonathan D Todd, Charles A Brearley

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
2.1field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 10 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 1 institution in 1 country.

Gregory D RixSchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.
Colleen SpriggSchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.
Hayley WhitfieldSchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.
Andrew M HemmingsSchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.ORCID 0000-0003-3053-3134
Jonathan D ToddSchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.
Charles A BrearleySchool of Biological Sciences, University of East Anglia, Norfolk, Virginia, United States of America.ORCID 0000-0001-6179-9109
Norfolk State University · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Phylogenetic analysis, homology modelling and biochemical methods have been employed to characterize a phytase from a Gram-negative soil bacterium. Acinetobacter sp. AC1-2 phytase belongs to clade 2 of the histidine (acid) phytases, to the Multiple Inositol Polyphosphate Phosphatase (MINPP) subclass. The enzyme was extraordinarily stable in solution both at room temperature and 4°C, retaining near 100% activity over 755 days. It showed a broad pH activity profile from 2-8.5 with maxima at 3, 4.5-5 and 6. The enzyme showed Michaelis-Menten kinetics and substrate inhibition (Vmax, Km, and Ki, 228 U/mg, 0.65 mM and 2.23 mM, respectively). Homology modelling using the crystal structure of a homologous MINPP from a human gut commensal bacterium indicated the presence of a potentially stabilising polypeptide loop (a U-loop) straddling the active site. By employ of the enantiospecificity of Arabidopsis inositol tris/tetrakisphosphate kinase 1 for inositol pentakisphosphates, we show AC1-2 MINPP to possess D6-phytase activity, which allowed modelling of active site specificity pockets for InsP6 substrate. While phytase gene transcription was unaltered in rich media, it was repressed in minimal media with phytic acid and orthophosphate as phosphate sources. The results of this study reveal AC1-2 MINPP to possess desirable attributes relevant to biotechnological use.

Indexed as

6-PhytaseAcinetobacterPhosphoric Monoester HydrolasesBacterial ProteinsHydrogen-Ion ConcentrationPhosphatesPhylogenyPhytic AcidSoil MicrobiologySubstrate Specificity6-PhytaseBacterial Proteinsmultiple inositol-polyphosphate phosphatasePhosphatesPhosphoric Monoester HydrolasesPhytic Acid

Identifiers

PMID36044476
PMCPMC9432691
OpenAlexW4293788985

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.