Evidence map›Paper›PMID 36066474›Full record

ArticleChembiochem : a European journal of chemical biology2022

3-Chloro-5-Substituted-1,2,4-Thiadiazoles (TDZs) as Selective and Efficient Protein Thiol Modifiers.

Niklas Jänsch, Anton Frühauf, Markus Schweipert, Cécile Debarnot, Miriam Erhardt, Gerald Brenner-Weiss, Frank Kirschhöfer, Tomas Jasionis, Edita Čapkauskaitė, Asta Zubrienė and 2 more

Open access · hybridAbstract read
In one paragraph

Article in Chembiochem : a European journal of chemical biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.4field-weighted citation impact, top 41% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 3 institutions in 2 countries.

Niklas JänschFachbereich Chemie-und Biotechnologie, Hochschule Darmstadt, Stephanstraße 7, 64295, Darmstadt, Germany.
Anton FrühaufFachbereich Chemie-und Biotechnologie, Hochschule Darmstadt, Stephanstraße 7, 64295, Darmstadt, Germany.
Markus SchweipertFachbereich Chemie-und Biotechnologie, Hochschule Darmstadt, Stephanstraße 7, 64295, Darmstadt, Germany.
Cécile DebarnotFachbereich Chemie-und Biotechnologie, Hochschule Darmstadt, Stephanstraße 7, 64295, Darmstadt, Germany.
Miriam ErhardtBioprozesstechnik und Biosysteme, Institut für Funktionelle Grenzflächen, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131, Karlsruhe, Germany.
Gerald Brenner-WeissBioprozesstechnik und Biosysteme, Institut für Funktionelle Grenzflächen, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131, Karlsruhe, Germany.
Frank KirschhöferBioprozesstechnik und Biosysteme, Institut für Funktionelle Grenzflächen, Karlsruher Institut für Technologie, Kaiserstraße 12, 76131, Karlsruhe, Germany.
Tomas JasionisDepartment of Biothermodynamics and Drug Design, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio 7, Vilnius, 10257, Lithuania.
Edita ČapkauskaitėDepartment of Biothermodynamics and Drug Design, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio 7, Vilnius, 10257, Lithuania.
Asta ZubrienėDepartment of Biothermodynamics and Drug Design, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio 7, Vilnius, 10257, Lithuania.
Daumantas MatulisDepartment of Biothermodynamics and Drug Design, Institute of Biotechnology, Life Sciences Center, Vilnius University, Saulėtekio 7, Vilnius, 10257, Lithuania.
Franz-Josef Meyer-AlmesFachbereich Chemie-und Biotechnologie, Hochschule Darmstadt, Stephanstraße 7, 64295, Darmstadt, Germany.ORCID 0000-0002-1001-3249
Darmstadt University of Applied Sciences · DEVilnius University · LTKarlsruhe Institute of Technology · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The study of cysteine modifications has gained much attention in recent years. This includes detailed investigations in the field of redox biology with focus on numerous redox derivatives like nitrosothiols, sulfenic acids, sulfinic acids and sulfonic acids resulting from increasing oxidation, S-lipidation, and perthiols. For these studies selective and rapid blocking of free protein thiols is required to prevent disulfide rearrangement. In our attempt to find new inhibitors of human histone deacetylase 8 (HDAC8) we discovered 5-sulfonyl and 5-sulfinyl substituted 1,2,4-thiadiazoles (TDZ), which surprisingly show an outstanding reactivity against thiols in aqueous solution. Encouraged by these observations we investigated the mechanism of action in detail and show that these compounds react more specifically and faster than commonly used N-ethyl maleimide, making them superior alternatives for efficient blocking of free thiols in proteins. We show that 5-sulfonyl-TDZ can be readily applied in commonly used biotin switch assays. Using the example of human HDAC8, we demonstrate that cysteine modification by a 5-sulfonyl-TDZ is easily measurable using quantitative HPLC/ESI-QTOF-MS/MS, and allows for the simultaneous measurement of the modification kinetics of seven solvent-accessible cysteines in HDAC8.

Indexed as

Sulfhydryl CompoundsThiadiazolesCysteineHistone DeacetylasesHumansOxidation-ReductionRepressor ProteinsSulfenic AcidsTandem Mass SpectrometryCysteineHDAC8 protein, humanHistone DeacetylasesRepressor ProteinsSulfenic AcidsSulfhydryl CompoundsThiadiazolesbiotin switch assaycovalent inactivatorsnucleophilic aromatic substitutionproteomic studiesthiol modification

Identifiers

PMID36066474
PMCPMC9828193
OpenAlexW4294783235

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.