Evidence map›Paper›PMID 36066491›Full record

ArticleThe Journal of experimental medicine2022

Diminished cell proliferation promotes natural killer cell adaptive-like phenotype by limiting FcεRIγ expression.

Avishai Shemesh, Yapeng Su, Daniel R Calabrese, Daniel Chen, Janice Arakawa-Hoyt, Kole T Roybal, James R Heath, John R Greenland, Lewis L Lanier

Open access · bronzeAbstract read
In one paragraph

Article in The Journal of experimental medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.1field-weighted citation impact, top 5% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 46 citations in OpenAlex.

  1. Trial
  2. Experimental and therapeutic medicine · 2026
    Review
  3. Article
  4. CITE-Seq Analysis Reveals a Differential Natural Killer CellInternational journal of molecular sciences · 2025
    Article
  5. CD94The European respiratory journal · 2024
    Article
  6. Article
  7. Review
  8. Article
  9. Article
  10. Article
  11. Article
  12. NK Cells: Not Just Followers But Also Initiators of Chronic Vascular Rejection.Transplant international : official journal of the European Society for Organ Transplantation · 2024
    Review
  13. Single-cell profiling aligns CD56Frontiers in immunology · 2024
    Article
  14. Article
  15. Article
  16. Article
  17. Article
  18. Observational
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 5 institutions in 1 country.

Avishai ShemeshDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA.ORCID 0000-0002-6934-7155
Yapeng SuInstitute for Systems Biology, Seattle, WA.ORCID 0000-0002-6305-8467
Daniel R CalabreseDepartment of Medicine, University of California, San Francisco, CA.ORCID 0000-0002-0596-3434
Daniel ChenInstitute for Systems Biology, Seattle, WA.ORCID 0000-0001-6660-6257
Janice Arakawa-HoytDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA.ORCID 0000-0003-0969-1082
Kole T RoybalDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA.ORCID 0000-0003-3030-7954
James R HeathInstitute for Systems Biology, Seattle, WA.ORCID 0000-0001-5356-4385
John R GreenlandDepartment of Medicine, University of California, San Francisco, CA.ORCID 0000-0003-1422-8367
Lewis L LanierDepartment of Microbiology and Immunology, University of California, San Francisco, San Francisco, CA.ORCID 0000-0003-1308-3952
University of California, San Francisco · USSan Francisco VA Medical Center · USUniversity of Washington · USGladstone Institutes · USInstitute for Systems Biology · US

Funding

Research BaseP30DK063720 · NIDDK · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GERMAN, MICHAEL S · 2003 to 2019
$21.8M
NK MemoryR01AI068129 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI LANIER, LEWIS LEE · 2006 to 2020
$6.0M
Telomere Dysfunction as a cause of Chronic Lung Allograft DysfunctionR01HL151552 · NHLBI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GREENLAND, JOHN · 2020 to 2024
$1.6M
Cytomegalovirus Immune Responses in Chronic Lung Allograft Dysfunction PathogenesisI01CX002011 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI GREENLAND, JOHN · 2020 to 2025
–
Natural killer cells in pulmonary ischemia-reperfusion injuryIK2BX005301 · VA · VETERANS AFFAIRS MED CTR SAN FRANCISCO · PI Daniel Calabrese · 2021 to 2026
–
BLRD VA IK2 BX005301CSRD VA I01 CX002011NHLBI NIH HHS R01 HL151552NIAID NIH HHS R01 AI068129NIDDK NIH HHS P30 DK063720
6 · The paper itself

Abstract

Human adaptive-like natural killer (NK) cells express low levels of FcεRIγ (FcRγ-/low) and are reported to accumulate during COVID-19 infection; however, the mechanism underlying and regulating FcRγ expression in NK cells has yet to be fully defined. We observed lower FcRγ protein expression in NK cell subsets from lung transplant patients during rapamycin treatment, suggesting a link with reduced mTOR activity. Further, FcRγ-/low NK cell subsets from healthy donors displayed reduced mTOR activity. We discovered that FcRγ upregulation is dependent on cell proliferation progression mediated by IL-2, IL-15, or IL-12, is sensitive to mTOR suppression, and is inhibited by TGFβ or IFNα. Accordingly, the accumulation of adaptive-like FcRγ-/low NK cells in COVID-19 patients corresponded to increased TGFβ and IFNα levels and disease severity. Our results show that an adaptive-like NK cell phenotype is induced by diminished cell proliferation and has an early prognostic value for increased TGFβ and IFNα levels in COVID-19 infection associated with disease severity.

Indexed as

COVID-19Cell ProliferationHumansKiller Cells, NaturalPhenotypeTOR Serine-Threonine KinasesTransforming Growth Factor betaTOR Serine-Threonine KinasesTransforming Growth Factor beta

Identifiers

PMID36066491
PMCPMC9448639
OpenAlexW4294755222

What Socratic holds

Textmetadata
LicenceCC BY-NC-SA
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.