Evidence map›Paper›PMID 36066492›Full record

ArticleThe Journal of experimental medicine2022

A glycan-based approach to cell characterization and isolation: Hematopoiesis as a paradigm.

Richard T Piszczatowski, Emily Schwenger, Sriram Sundaravel, Catarina M Stein, Yang Liu, Pamela Stanley, Amit Verma, Deyou Zheng, Ronald D Seidel, Steven C Almo and 3 more

Abstract read
In one paragraph

Article in The Journal of experimental medicine, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Myeloid deficiency of heparan sulfate 6-O-endosulfatases impairs bone marrow hematopoiesis.Matrix biology : journal of the International Society for Matrix Biology · 2024
    Article
  5. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Richard T Piszczatowski *Department of Cell Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-1250-683X
Emily Schwenger *Department of Cell Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-8482-8678
Sriram SundaravelDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0003-1638-710X
Catarina M SteinDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-9015-7671
Yang LiuDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-5804-0043
Pamela StanleyDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0001-5704-3747
Amit VermaDepartment of Developmental and Molecular Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0001-7592-7693
Deyou ZhengDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0003-4354-5337
Ronald D SeidelDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0001-6928-5268
Steven C AlmoDepartment of Biochemistry, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0003-2591-5234
Robert A TownleyDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-9347-2431
Hannes E BülowDepartment of Genetics, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-6271-0572
Ulrich SteidlDepartment of Cell Biology, Albert Einstein College of Medicine, Bronx, NY.ORCID 0000-0002-9458-1795

Funding

WORD PROCESSORP30CA013330 · NCI · YESHIVA UNIVERSITY · PI Ulrich Steidl · 1985 to 2026
$111.2M
MEDICAL SCIENTIST TRAINING PROGRAMT32GM007288 · NIGMS · YESHIVA UNIVERSITY · PI AKABAS, MYLES H. · 1985 to 2022
$35.6M
Molecular and Cellular Regulation of Pre-Leukemic Stem Cells and their Therapeutic TargetingR35CA253127 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI Ulrich Steidl · 2021 to 2026
$5.6M
A Fluorescence-Based High-Throughput Platform for Glycotyping the Hematopoietic Cell LineageU01CA241981 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI BUELOW, HANNES ERICH, STEIDL, ULRICH · 2019 to 2021
$1.3M
Leveraging epigenetic and epitranscriptomic aberrations in cancer to identify molecular targets for designing therapyK00CA223044 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE · PI SUNDARAVEL, SRIRAM · 2019 to 2022
$379k
Investigating the role of Nol3 in normal and malignant hematopoiesisF30CA217063 · NCI · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI PISZCZATOWSKI, RICHARD · 2018 to 2021
$201k
NCI NIH HHS F30 CA217063NCI NIH HHS K00 CA223044NCI NIH HHS P30 CA013330NCI NIH HHS R35 CA253127NCI NIH HHS U01 CA241981NIGMS NIH HHS T32 GM007288
6 · The paper itself

Abstract

Cell surfaces display a wide array of molecules that confer identity. While flow cytometry and cluster of differentiation (CD) markers have revolutionized cell characterization and purification, functionally heterogeneous cellular subtypes remain unresolvable by the CD marker system alone. Using hematopoietic lineages as a paradigm, we leverage the extraordinary molecular diversity of heparan sulfate (HS) glycans to establish cellular "glycotypes" by utilizing a panel of anti-HS single-chain variable fragment antibodies (scFvs). Prospective sorting with anti-HS scFvs identifies functionally distinct glycotypes within heterogeneous pools of mouse and human hematopoietic progenitor cells and enables further stratification of immunophenotypically pure megakaryocyte-erythrocyte progenitors. This stratification correlates with expression of a heptad of HS-related genes that is reflective of the HS epitope recognized by specific anti-HS scFvs. While we show that HS glycotyping provides an orthogonal set of tools for resolution of hematopoietic lineages, we anticipate broad utility of this approach in defining and isolating novel, viable cell types across diverse tissues and species.

Indexed as

HematopoiesisSingle-Chain AntibodiesFlow CytometryHematopoietic Stem CellsHeparan SulfateHumansProspective StudiesHeparan SulfateSingle-Chain Antibodies

Identifiers

PMID36066492
PMCPMC9455685

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.