Evidence map›Paper›PMID 36070560›Full record

ReviewAnnual review of genetics2022

Decoding the Spermatogenesis Program: New Insights from Transcriptomic Analyses.

Mashiat Rabbani, Xianing Zheng, Gabe L Manske, Alexander Vargo, Adrienne N Shami, Jun Z Li, Saher Sue Hammoud

Open access · bronzeAbstract readReview
In one paragraph

Review in Annual review of genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
5.5field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 62 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Mashiat RabbaniDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
Xianing ZhengDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
Gabe L ManskeCellular and Molecular Biology Graduate Program, University of Michigan, Ann Arbor, Michigan, USA.
Alexander VargoDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
Adrienne N ShamiDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
Jun Z LiDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
Saher Sue HammoudDepartment of Human Genetics, University of Michigan, Ann Arbor, Michigan, USA; email: hammou@med.umich.edu.
University of Michigan–Ann Arbor · US

Funding

MICHIGAN MEDICAL SCIENTIST TRAINING PROGRAMT32GM007863 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI COLLINS, KATHLEEN L. · 1985 to 2024
$38.3M
CELLULAR AND MOLECULAR BIOLOGY AT MICHIGANT32GM007315 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PUTHENVEEDU, MANOJKUMAR A · 1985 to 2021
$12.8M
TRAINING PROGRAM IN ORGANOGENESIST32HD007505 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI PASCA DI MAGLIANO, MARINA, SPENCE, JASON · 1997 to 2021
$6.9M
Contributions of Sperm Chromatin to development: A Myth or Reality?DP2HD091949 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAMMOUD, SAHER SUE · 2016 to 2016
$2.3M
Career Training in Reproductive BiologyT32HD079342 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI Suzanne M MOENTER · 2014 to 2026
$2.3M
Sperm Chromatin: Implications on organismal development and fertilityR01HD104680 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAMMOUD, SAHER SUE · 2021 to 2024
$1.8M
Improving Fertility Preservation in Boys with CancerR01HD092084 · NICHD · MAGEE-WOMEN'S RES INST AND FOUNDATION · PI ORWIG, KYLE EDWIN · 2017 to 2019
$1.1M
Comprehensive mapping of mouse testis cell types and spermatogenic stages by single-cell RNA sequencingR21HD090371 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI HAMMOUD, SAHER SUE · 2018 to 2019
$444k
The Role of Parental Histone Proteins in Early DevelopmentF31HD100124 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MANSKE, GABRIEL LEE · 2019 to 2021
$113k
Elucidating the Role of TCF21+ Mesenchymal Cells in Testis Tissue Homeostasis and RegenerationF30HD097961 · NICHD · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI SHAMI, ADRIENNE NIEDERRITER · 2018 to 2020
$108k
NICHD NIH HHS DP2 HD091949NICHD NIH HHS F30 HD097961NICHD NIH HHS F31 HD100124NICHD NIH HHS R01 HD092084NICHD NIH HHS R01 HD104680NICHD NIH HHS R21 HD090371NICHD NIH HHS T32 HD007505NICHD NIH HHS T32 HD079342NIGMS NIH HHS T32 GM007315NIGMS NIH HHS T32 GM007863
6 · The paper itself

Abstract

Spermatogenesis is a complex differentiation process coordinated spatiotemporally across and along seminiferous tubules. Cellular heterogeneity has made it challenging to obtain stage-specific molecular profiles of germ and somatic cells using bulk transcriptomic analyses. This has limited our ability to understand regulation of spermatogenesis and to integrate knowledge from model organisms to humans. The recent advancement of single-cell RNA-sequencing (scRNA-seq) technologies provides insights into the cell type diversity and molecular signatures in the testis. Fine-grained cell atlases of the testis contain both known and novel cell types and define the functional states along the germ cell developmental trajectory in many species. These atlases provide a reference system for integrated interspecies comparisons to discover mechanistic parallels and to enable future studies. Despite recent advances, we currently lack high-resolution data to probe germ cell-somatic cell interactions in the tissue environment, but the use of highly multiplexed spatial analysis technologies has begun to resolve this problem. Taken together, recent single-cell studies provide an improvedunderstanding of gametogenesis to examine underlying causes of infertility and enable the development of new therapeutic interventions.

Indexed as

SpermatogenesisTranscriptomeCell DifferentiationGene Expression ProfilingHumansMaleTestisevolutioninfertilitymeiosisscRNA-seqspermatogenesistranscription

Identifiers

PMID36070560
PMCPMC10722372
OpenAlexW4294912018

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.