Evidence map›Paper›PMID 36083269›Full record

ArticleHuman molecular genetics2022

Building integrative functional maps of gene regulation.

Jinrui Xu, Henry E Pratt, Jill E Moore, Mark B Gerstein, Zhiping Weng

Abstract read
In one paragraph

Article in Human molecular genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Article
  2. Article
  3. Article
  4. Human Molecular Genetics Review Issue 2022.Human molecular genetics · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Jinrui XuProgram in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.
Henry E PrattProgram in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA.
Jill E MooreProgram in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA.
Mark B GersteinProgram in Computational Biology and Bioinformatics, Yale University, New Haven, CT 06520, USA.
Zhiping WengProgram in Bioinformatics and Integrative Biology, UMass Chan Medical School, Worcester, MA 01605, USA.ORCID 0000-0002-3032-7966

Funding

EDAC: ENCODE Data Analysis CenterU24HG009446 · NHGRI · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GERSTEIN, MARK BENDER, WENG, ZHIPING · 2017 to 2022
$10.4M
Discovery and validation of neuronal enhancers as development of psychiatric disorders supplementU01MH116492 · NIMH · UNIV OF MASSACHUSETTS MED SCH WORCESTER · PI GERSTEIN, MARK BENDER, WENG, ZHIPING · 2018 to 2023
$6.2M
NHGRI NIH HHS U24 HG009446NIH HHS U01MH116492
6 · The paper itself

Abstract

Every cell in the human body inherits a copy of the same genetic information. The three billion base pairs of DNA in the human genome, and the roughly 50 000 coding and non-coding genes they contain, must thus encode all the complexity of human development and cell and tissue type diversity. Differences in gene regulation, or the modulation of gene expression, enable individual cells to interpret the genome differently to carry out their specific functions. Here we discuss recent and ongoing efforts to build gene regulatory maps, which aim to characterize the regulatory roles of all sequences in a genome. Many researchers and consortia have identified such regulatory elements using functional assays and evolutionary analyses; we discuss the results, strengths and shortcomings of their approaches. We also discuss new techniques the field can leverage and emerging challenges it will face while striving to build gene regulatory maps of ever-increasing resolution and comprehensiveness.

Indexed as

Gene Expression RegulationRegulatory Sequences, Nucleic AcidChromosome MappingDNAGenome, HumanHumansDNAcis-regulatory elementsepigenetics profilesGene Regulatory Mapstranscriptional regulationtranscription factor binding sites

Identifiers

PMID36083269
PMCPMC9585680

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.