Evidence map›Paper›PMID 36094204›Full record

ArticleMicrobiology spectrum2022

Genomic and Molecular Identification of Genes Contributing to the Caspofungin Paradoxical Effect in

Shu Zhao, Adela Martin-Vicente, Ana Cristina Colabardini, Lilian Pereira Silva, David C Rinker, Jarrod R Fortwendel, Gustavo Henrique Goldman, John G Gibbons

Open access · goldAbstract read
In one paragraph

Article in Microbiology spectrum, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.4field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 4 citations in OpenAlex.

  1. Article
  2. The Influence ofJournal of fungi (Basel, Switzerland) · 2024
    Article
  3. Article
  4. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 4 institutions in 2 countries.

Shu Zhao *Molecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst, Massachusetts, USA.
Adela Martin-Vicente *Department of Clinical Pharmacy and Translational Science, University of Tennessee Health Science Centergrid.267301.1, Memphis, Tennessee, USA.
Ana Cristina ColabardiniFaculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil.
Lilian Pereira SilvaFaculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil.
David C RinkerDepartment of Biological Sciences, Vanderbilt Universitygrid.152326.1, Nashville, Tennessee, USA.
Jarrod R FortwendelDepartment of Clinical Pharmacy and Translational Science, University of Tennessee Health Science Centergrid.267301.1, Memphis, Tennessee, USA.ORCID 0000-0003-2301-4272
Gustavo Henrique GoldmanFaculdade de Ciências Farmacêuticas de Ribeirão Preto, Universidade de São Paulo, São Paulo, Brazil.ORCID 0000-0002-2986-350X
John G GibbonsMolecular and Cellular Biology Graduate Program, University of Massachusetts, Amherst, Massachusetts, USA.ORCID 0000-0003-1282-9345
Universidade de São Paulo · BRUniversity of Massachusetts Amherst · USUniversity of Tennessee Health Science Center · USVanderbilt University · US

Funding

Deciphering the phenotypic and genomic traits that underlie the evolution of pathogenicity differences among Aspergillus fumigatus and its close relativesR01AI153356 · NIAID · VANDERBILT UNIVERSITY · PI Antonis Rokas · 2022 to 2026
$3.5M
Unlocking the cidal activity of echinocandins against Aspergillus fumigatusR01AI158442 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI FORTWENDEL, JARROD R. · 2021 to 2025
$2.3M
The Aspergillus fumigatus Genetic Variant and Isolate Repository (FumigatusGVIR): A community resource to facilitate association mapping of pathogenicity associated traitsR21AI137485 · NIAID · UNIVERSITY OF MASSACHUSETTS AMHERST · PI GIBBONS, JOHN G · 2018 to 2019
$430k
Control of Antifungal Drug Tolerance through the Aspergillus fumigatus KinomeR21AI142509 · NIAID · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI FORTWENDEL, JARROD R. · 2019 to 2020
$418k
NIAID NIH HHS R01 AI153356NIAID NIH HHS R01 AI158442NIAID NIH HHS R21 AI137485NIAID NIH HHS R21 AI142509
6 · The paper itself

Abstract

Aspergillus fumigatus is a deadly opportunistic fungal pathogen responsible for ~100,000 annual deaths. Azoles are the first line antifungal agent used against A. fumigatus, but azole resistance has rapidly evolved making treatment challenging. Caspofungin is an important second-line therapy against invasive pulmonary aspergillosis, a severe A. fumigatus infection. Caspofungin functions by inhibiting β-1,3-glucan synthesis, a primary and essential component of the fungal cell wall. A phenomenon termed the caspofungin paradoxical effect (CPE) has been observed in several fungal species where at higher concentrations of caspofungin, chitin replaces β-1,3-glucan, morphology returns to normal, and growth rate increases. CPE appears to occur

Indexed as

Antifungal AgentsAspergillus fumigatusAzolesCaspofunginChitinEchinocandinsFungal ProteinsGenomicsPhosphoric Monoester HydrolasesAntifungal AgentsAzolesCaspofunginChitinEchinocandinsFungal ProteinsPhosphoric Monoester HydrolasesAspergillus fumigatuscaspofunginCRISPRechinocandingenomicsGWAmycology

Identifiers

PMID36094204
PMCPMC9603777
OpenAlexW4295280462

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.