Evidence map›Paper›PMID 36095002›Full record

ArticlePloS one2022

Transcriptome profiling of barley and tomato shoot and root meristems unravels physiological variations underlying photoperiodic sensitivity.

Michael Schneider, Lucia Vedder, Benedict Chijioke Oyiga, Boby Mathew, Heiko Schoof, Jens Léon, Ali Ahmad Naz

Open access · goldAbstract read
In one paragraph

Article in PloS one, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.2field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Michael SchneiderUniversity of Bonn, Institute of Crop Science and Resource Conservation, Plant Breeding, Bonn, Germany.ORCID 0000-0002-6491-8852
Lucia VedderUniversity of Bonn, Institute of Crop Science and Resource Conservation, Crop Bioinformatics, Bonn, Germany.ORCID 0000-0002-8924-9800
Benedict Chijioke OyigaUniversity of Bonn, Institute of Crop Science and Resource Conservation, Plant Breeding, Bonn, Germany.
Boby MathewUniversity of Bonn, Institute of Crop Science and Resource Conservation, Plant Breeding, Bonn, Germany.
Heiko SchoofUniversity of Bonn, Institute of Crop Science and Resource Conservation, Crop Bioinformatics, Bonn, Germany.ORCID 0000-0002-1527-3752
Jens LéonUniversity of Bonn, Institute of Crop Science and Resource Conservation, Plant Breeding, Bonn, Germany.
Ali Ahmad NazUniversity of Bonn, Institute of Crop Science and Resource Conservation, Plant Breeding, Bonn, Germany.
University of Bonn · DE

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The average sowing date of crops in temperate climate zones has been shifted forwards by several days, resulting in a changed photoperiod regime at the emergence stage. In the present study, we performed a global transcriptome profiling of plant development genes in the seedling stage of root and shoot apical meristems of a photoperiod-sensitive species (barley) and a photoperiod insensitive species (tomato) in short-day conditions (8h). Variant expression indicated differences in physiological development under this short day-length regime between species and tissues. The barley tissue transcriptome revealed reduced differentiation compared to tomato. In addition, decreased photosynthetic activity was observed in barley transcriptome and leaf chlorophyll content under 8h conditions, indicating a slower physiological development of shoot meristems than in tomatoes. The photomorphogenesis controlling cryptochrome gene cry1, with an effect on physiological differentiation, showed an underexpression in barley compared to tomato shoot meristems. This might lead to a cascade of suspended sink-source activities, which ultimately delay organ development and differentiation in barley shoot meristems under short photoperiods.

Indexed as

HordeumSolanum lycopersicumGene Expression ProfilingMeristemPhotoperiod

Identifiers

PMID36095002
PMCPMC9467324
OpenAlexW4295478816

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.