Evidence map›Paper›PMID 36097056›Full record

ArticleCommunications biology2022

The choanoflagellate pore-forming lectin SaroL-1 punches holes in cancer cells by targeting the tumor-related glycosphingolipid Gb3.

Simona Notova, François Bonnardel, Francesca Rosato, Lina Siukstaite, Jessica Schwaiger, Jia Hui Lim, Nicolai Bovin, Annabelle Varrot, Yu Ogawa, Winfried Römer and 2 more

Open access · goldAbstract read
In one paragraph

Article in Communications biology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed, 1 pooled it
0.8field-weighted citation impact, top 31% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 1 synthesis or guideline pooled it, 9 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Article
  4. Elucidating the glycan-binding specificity and structure ofBeilstein journal of organic chemistry · 2024
    Article
  5. Review
  6. Article
  7. Review
  8. Extending Janus lectins architecture: Characterization and application to protocells.Computational and structural biotechnology journal · 2022
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 4 countries.

Simona Notova *Univ. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.
François Bonnardel *Univ. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.
Francesca RosatoFaculty of Biology, University of Freiburg, 79104, Freiburg, Germany.
Lina SiukstaiteFaculty of Biology, University of Freiburg, 79104, Freiburg, Germany.
Jessica SchwaigerFaculty of Biology, University of Freiburg, 79104, Freiburg, Germany.
Jia Hui LimUniv. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.
Nicolai BovinShemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Science, Moscow, 117997, Russian Federation.
Annabelle VarrotUniv. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.ORCID 0000-0001-6667-8162
Yu OgawaUniv. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France.
Winfried RömerFaculty of Biology, University of Freiburg, 79104, Freiburg, Germany. winfried.roemer@bioss.uni-freiburg.de.ORCID 0000-0002-2847-246X
Frédérique LisacekSwiss Institute of Bioinformatics, CH-1227, Geneva, Switzerland. frederique.lisacek@sib.swiss.
Anne ImbertyUniv. Grenoble Alpes, CNRS, CERMAV, 38000, Grenoble, France. anne.imberty@cermav.cnrs.fr.ORCID 0000-0001-6825-9527
Centre National de la Recherche Scientifique · FRUniversity of Freiburg · DESIB Swiss Institute of Bioinformatics · CHInstitute of Bioorganic Chemistry · RU

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Choanoflagellates are primitive protozoa used as models for animal evolution. They express a large variety of multi-domain proteins contributing to adhesion and cell communication, thereby providing a rich repertoire of molecules for biotechnology. Adhesion often involves proteins adopting a β-trefoil fold with carbohydrate-binding properties therefore classified as lectins. Sequence database screening with a dedicated method resulted in TrefLec, a database of 44714 β-trefoil candidate lectins across 4497 species. TrefLec was searched for original domain combinations, which led to single out SaroL-1 in the choanoflagellate Salpingoeca rosetta, that contains both β-trefoil and aerolysin-like pore-forming domains. Recombinant SaroL-1 is shown to bind galactose and derivatives, with a stronger affinity for cancer-related α-galactosylated epitopes such as the glycosphingolipid Gb3, when embedded in giant unilamellar vesicles or cell membranes. Crystal structures of complexes with Gb3 trisaccharide and GalNAc provided the basis for building a model of the oligomeric pore. Finally, recognition of the αGal epitope on glycolipids required for hemolysis of rabbit erythrocytes suggests that toxicity on cancer cells is achieved through carbohydrate-dependent pore-formation.

Indexed as

ChoanoflagellataNeoplasmsAnimalsCarbohydratesGlycosphingolipidsLectinsRabbitsCarbohydratesGlycosphingolipidsLectins

Identifiers

PMID36097056
PMCPMC9468336
OpenAlexW4295249459

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.