Evidence map›Paper›PMID 36098503›Full record

ArticleeLife2022

Structure of the HOPS tethering complex, a lysosomal membrane fusion machinery.

Dmitry Shvarev, Jannis Schoppe, Caroline König, Angela Perz, Nadia Füllbrunn, Stephan Kiontke, Lars Langemeyer, Dovile Januliene, Kilian Schnelle, Daniel Kümmel and 3 more

Abstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 51 papers.

0numbers the graph read from it
0cells of the map it votes in
51citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

51 citing papers in PubMed.

  1. Article
  2. Article
  3. Review
  4. Article
  5. Article
  6. NPC1 trafficking via VPS41-dependent LAMP carriers regulates endosomal cholesterol homeostasis.Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
  7. Article
  8. Regulation of vacuole fusion in stomata by dephosphorylation of the HOPS subunit VPS39.The Plant journal : for cell and molecular biology · 2025
    Article
  9. Review
  10. Article
  11. Cysteine reactivity profiling identifies host regulators ofbioRxiv : the preprint server for biology · 2025
    Article
  12. SNARE disassembly requires Sec18/NSF side loading.Nature structural & molecular biology · 2025
    Article
  13. Review
  14. ThemSphere · 2025
    Article
  15. Sec18 ATP hydrolysis selectively releases Sec17 fromMolecular biology of the cell · 2025
    Article
  16. SNARE disassembly requires Sec18/NSF side-loading.bioRxiv : the preprint server for biology · 2025
    Article
  17. Endocytic tethers modulate unconventional GAPDH secretion.Cell surface (Amsterdam, Netherlands) · 2025
    Article
  18. Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Dmitry Shvarev *Department of Biology/Chemistry, Structural Biology section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0002-9776-268X
Jannis Schoppe *Department of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.
Caroline König *Department of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.
Angela PerzDepartment of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.
Nadia FüllbrunnDepartment of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.
Stephan KiontkeDepartment of Plant Physiology and Photo Biology, University of Marburg, Marburg, Germany.ORCID 0000-0001-5822-913X
Lars LangemeyerDepartment of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0002-4309-0910
Dovile JanulieneDepartment of Biology/Chemistry, Structural Biology section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0002-3279-7590
Kilian SchnelleDepartment of Biology/Chemistry, Structural Biology section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0001-8808-594X
Daniel KümmelDepartment of Chemistry and Pharmacy, Institute of Biochemistry, University of Münster, Münster, Germany.ORCID 0000-0003-3950-5914
Florian FröhlichDepartment of Biology/Chemistry, Molecular Membrane Biology group, Osnabrück University, Osnabrück, Germany.ORCID 0000-0001-8307-2189
Arne MoellerDepartment of Biology/Chemistry, Structural Biology section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0003-1101-5366
Christian UngermannDepartment of Biology/Chemistry, Biochemistry section, Osnabrück University, Osnabrück, Germany.ORCID 0000-0003-4331-8695

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Lysosomes are essential for cellular recycling, nutrient signaling, autophagy, and pathogenic bacteria and viruses invasion. Lysosomal fusion is fundamental to cell survival and requires HOPS, a conserved heterohexameric tethering complex. On the membranes to be fused, HOPS binds small membrane-associated GTPases and assembles SNAREs for fusion, but how the complex fulfills its function remained speculative. Here, we used cryo-electron microscopy to reveal the structure of HOPS. Unlike previously reported, significant flexibility of HOPS is confined to its extremities, where GTPase binding occurs. The SNARE-binding module is firmly attached to the core, therefore, ideally positioned between the membranes to catalyze fusion. Our data suggest a model for how HOPS fulfills its dual functionality of tethering and fusion and indicate why it is an essential part of the membrane fusion machinery.

Indexed as

Membrane FusionSaccharomyces cerevisiae ProteinsCryoelectron MicroscopyLysosomesrab GTP-Binding ProteinsSaccharomyces cerevisiaeSNARE ProteinsVacuolesrab GTP-Binding ProteinsSaccharomyces cerevisiae ProteinsSNARE Proteinscell biologyHOPSlysosomemembrane fusionmolecular biophysicsRab GTPaseS. cerevisiaestructural biologytetheringvacuole

Identifiers

PMID36098503
PMCPMC9592082

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.