Evidence map›Paper›PMID 36109150›Full record

ArticleGenome research2022

A butterfly pan-genome reveals that a large amount of structural variation underlies the evolution of chromatin accessibility.

Angelo A Ruggieri, Luca Livraghi, James J Lewis, Elizabeth Evans, Francesco Cicconardi, Laura Hebberecht, Yadira Ortiz-Ruiz, Stephen H Montgomery, Alfredo Ghezzi, José Arcadio Rodriguez-Martinez and 5 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Genome research, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 25 papers.

0numbers the graph read from it
0cells of the map it votes in
25citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

25 citing papers in PubMed, 31 citations in OpenAlex.

  1. Article
  2. Article
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  4. Evolution of compound eye cell types shapes visual behaviors acrossbioRxiv : the preprint server for biology · 2026
    Article
  5. Article
  6. Article
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  8. Genome-wide in-silico identification and characterization of LTR retrotransposons in domestic goat (Capra hircus).Mammalian genome : official journal of the International Mammalian Genome Society · 2026
    Article
  9. Article
  10. ATAC-seq in Emerging Model Organisms: Challenges and Strategies.Journal of experimental zoology. Part B, Molecular and developmental evolution · 2025
    Review
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Review
  17. Article
  18. Structural Variants and Speciation: Multiple Processes at Play.Cold Spring Harbor perspectives in biology · 2024
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 6 countries.

Angelo A RuggieriDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.ORCID 0000-0003-1427-2667
Luca LivraghiDepartment of Biological Sciences, The George Washington University, Washington, DC 20052, USA.ORCID 0000-0002-2597-7550
James J LewisDepartment of Zoology, University of British Columbia, Vancouver, British Columbia V6T 1Z4, Canada.ORCID 0000-0002-4170-9118
Elizabeth EvansDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.
Francesco CicconardiSchool of Biological Sciences, Bristol University, Bristol BS8 1QU, United Kingdom.ORCID 0000-0001-6509-6179
Laura HebberechtSchool of Biological Sciences, Bristol University, Bristol BS8 1QU, United Kingdom.
Yadira Ortiz-RuizDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.
Stephen H MontgomerySchool of Biological Sciences, Bristol University, Bristol BS8 1QU, United Kingdom.ORCID 0000-0002-5474-5695
Alfredo GhezziDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.ORCID 0000-0001-9176-1320
José Arcadio Rodriguez-MartinezDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.
Chris D JigginsDepartment of Zoology, University of Cambridge, Cambridge CB2 3EJ, United Kingdom.ORCID 0000-0002-7809-062X
W Owen McMillanSmithsonian Tropical Research Institute, Apartado 0843-03092 Panamá, Panama.ORCID 0000-0003-2805-2745
Brian A CountermanDepartment of Biological Sciences, Auburn University, Auburn, Alabama 36849, USA.ORCID 0000-0003-2724-071X
Riccardo PapaDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.ORCID 0000-0002-7986-9993
Steven M Van BelleghemDepartment of Biology, University of Puerto Rico-Rio Piedras, San Juan PR 00931, Puerto Rico.ORCID 0000-0001-9399-1007
University of Puerto Rico at Río Piedras · PRUniversity of Bristol · GBSmithsonian Tropical Research Institute · PAAuburn University · USUniversity of British Columbia · CAUniversity of Cambridge · GB

Funding

SCIENCE AND TECHNOLOGY COMPETENCY & EDUCATION CORE (STCE)P20GM103475 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI Jose R. Rodriguez-Medina · 2012 to 2026
$52.9M
The Role of Sensory Input to Mammalian Locomotion After the Loss of supraspinal.P20GM103642 · NIGMS · UNIVERSITY OF PUERTO RICO MED SCIENCES · PI LASALDE-DOMINICCI, JOSE ANTONIO · 2013 to 2023
$20.6M
NIGMS NIH HHS P20 GM103475NIGMS NIH HHS P20 GM103642
6 · The paper itself

Abstract

Despite insertions and deletions being the most common structural variants (SVs) found across genomes, not much is known about how much these SVs vary within populations and between closely related species, nor their significance in evolution. To address these questions, we characterized the evolution of indel SVs using genome assemblies of three closely related

Indexed as

ButterfliesAnimalsChromatinDNA Transposable ElementsDrosophilaEvolution, MolecularGenomicsINDEL MutationChromatinDNA Transposable Elements

Identifiers

PMID36109150
PMCPMC9712634
OpenAlexW4296029340

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.