Evidence map›Paper›PMID 36119018›Full record

ArticleFrontiers in immunology2022

Mapping monoclonal anti-SARS-CoV-2 antibody repertoires against diverse coronavirus antigens.

Matheus Oliveira de Souza, Bharat Madan, I-Ting Teng, Aric Huang, Lihong Liu, Ahmed S Fahad, Sheila N Lopez Acevedo, Xiaoli Pan, Mallika Sastry, Matias Gutierrez-Gonzalez and 5 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 7 citations in OpenAlex.

  1. Article
  2. Article
  3. Optimized single-cell gates for yeast display screening.Protein engineering, design & selection : PEDS · 2025
    Article
  4. Backstage Heroes-Yeast in COVID-19 Research.International journal of molecular sciences · 2024
    Review
  5. Article
  6. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors at 6 institutions in 1 country.

Matheus Oliveira de SouzaDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
Bharat MadanDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
I-Ting TengVaccine Research Center, National Institute of Allergy and Infectious Diseases, Bethesda, MD, United States.
Aric HuangDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
Lihong LiuAaron Diamond acquired immunodeficiency syndrome (AIDS) Research Center, Columbia University Irving Medical Center, New York, NY, United States.
Ahmed S FahadDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
Sheila N Lopez AcevedoDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
Xiaoli PanDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
Mallika SastryVaccine Research Center, National Institute of Allergy and Infectious Diseases, Bethesda, MD, United States.
Matias Gutierrez-GonzalezRagon Institute of Massachusetts General Hospital (MGH), Massachusetts Institute of Technology (MIT), and Harvard, Cambridge, MA, United States.
Michael T YinDepartment of Medicine , Division of Infectious Diseases, Columbia University Irving Medical Center, New York, NY, United States.
Tongqing ZhouVaccine Research Center, National Institute of Allergy and Infectious Diseases, Bethesda, MD, United States.
David D HoAaron Diamond acquired immunodeficiency syndrome (AIDS) Research Center, Columbia University Irving Medical Center, New York, NY, United States.
Peter D KwongVaccine Research Center, National Institute of Allergy and Infectious Diseases, Bethesda, MD, United States.
Brandon J DeKoskyDepartment of Pharmaceutical Chemistry, The University of Kansas, Lawrence, KS, United States.
University of Kansas · USNational Institute of Allergy and Infectious Diseases · USAaron Diamond AIDS Research Center · USColumbia University · USColumbia University Irving Medical Center · USRagon Institute of MGH, MIT and Harvard · US

Funding

Columbia Partnership for Prevention and Control of HIV/AIDS Clinical Trials UnitUM1AI069470 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI MAGDALENA ELZBIETA SOBIESZCZYK · 2012 to 2026
$44.8M
Columbia Collaborative HIV/AIDS Clinical Trials UnitU01AI069470 · NIAID · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI HAMMER, SCOTT M · 2007 to 2011
$15.4M
The influence of evolutionary landscapes on protective antibody developmentR01AI141452 · NIAID · UNIVERSITY OF COLORADO · PI WHITEHEAD, TIMOTHY ANDREW · 2019 to 2023
$2.8M
Comprehensive analysis of human adaptive immune receptors to elucidate correlates of Epstein-Barr virus disease suppressionDP5OD023118 · OD · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES · 2016 to 2022
$2.2M
Comprehensive molecular and functional analyses of anti-HIV-1 broadly neutralizing antibody repertoiresR21AI143407 · NIAID · UNIVERSITY OF KANSAS LAWRENCE · PI DEKOSKY, BRANDON JAMES, FORREST, MARCUS LAIRD · 2019 to 2020
$435k
NIAID NIH HHS R01 AI141452NIAID NIH HHS R21 AI143407NIAID NIH HHS U01 AI069470NIAID NIH HHS UM1 AI069470NIH HHS DP5 OD023118
6 · The paper itself

Abstract

Variants of severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) have emerged continuously, challenging the effectiveness of vaccines, diagnostics, and treatments. Moreover, the possibility of the appearance of a new betacoronavirus with high transmissibility and high fatality is reason for concern. In this study, we used a natively paired yeast display technology, combined with next-generation sequencing (NGS) and massive bioinformatic analysis to perform a comprehensive study of subdomain specificity of natural human antibodies from two convalescent donors. Using this screening technology, we mapped the cross-reactive responses of antibodies generated by the two donors against SARS-CoV-2 variants and other betacoronaviruses. We tested the neutralization potency of a set of the cross-reactive antibodies generated in this study and observed that most of the antibodies produced by these patients were non-neutralizing. We performed a comparison of the specific and non-specific antibodies by somatic hypermutation in a repertoire-scale for the two individuals and observed that the degree of somatic hypermutation was unique for each patient. The data from this study provide functional insights into cross-reactive antibodies that can assist in the development of strategies against emerging SARS-CoV-2 variants and divergent betacoronaviruses.

Indexed as

COVID-19SARS-CoV-2Antibodies, ViralHumansMembrane GlycoproteinsNeutralization TestsSpike Glycoprotein, CoronavirusViral Envelope ProteinsAntibodies, ViralMembrane GlycoproteinsSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2Viral Envelope Proteinsbetacoronavirusescross-reactive antibodiesSARS-CoV-2SARS-CoV-2 variantsyeast display

Identifiers

PMID36119018
PMCPMC9478573
OpenAlexW4294190175

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.