Evidence map›Paper›PMID 36130227›Full record

ArticleInternational journal of epidemiology2023

Somatic loss of the Y chromosome is associated with arsenic exposure among Bangladeshi men.

Kathryn Demanelis, Dayana A Delgado, Lin Tong, Farzana Jasmine, Alauddin Ahmed, Tariqul Islam, Faruque Parvez, Muhammad G Kibriya, Joseph H Graziano, Habibul Ahsan and 1 more

Open access · bronzeAbstract read
In one paragraph

Article in International journal of epidemiology, 2023. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.5field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 14 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 2 countries.

Kathryn DemanelisDivision of Hematology/Oncology, Department of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Dayana A DelgadoDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Lin TongDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Farzana JasmineDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Alauddin AhmedUChicago Research Bangladesh, Dhaka, Bangladesh.
Tariqul IslamUChicago Research Bangladesh, Dhaka, Bangladesh.
Faruque ParvezDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Muhammad G KibriyaDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Joseph H GrazianoDepartment of Environmental Health Sciences, Mailman School of Public Health, Columbia University, New York, NY, USA.
Habibul AhsanDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Brandon L PierceDepartment of Public Health Sciences, The University of Chicago, Chicago, IL, USA.
Chicago Department of Public Health · USColumbia University · USUniversity of Chicago · USUniversity of Chicago Research Bangladesh · BD

Funding

VIRAL ONCOLOGY CORE FACILITYP30CA014599 · NCI · UNIVERSITY OF CHICAGO · PI KUNLE ODUNSI · 1985 to 2026
$122.1M
Training CoreP42ES010349 · NIEHS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI NAVAS-ACIEN, ANA · 2000 to 2020
$53.6M
Chemoprevention of arsenic-induced skin cancerR01CA107431 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2005 to 2014
$17.3M
Pilot Program CoreP30ES027792 · NIEHS · UNIVERSITY OF CHICAGO · PI Gokhan M. Mutlu, Gail S Prins · 2017 to 2026
$13.6M
Arsenic and the Human Genome: susceptibility and response to exposure Supplement 4R35ES028379 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2017 to 2024
$5.6M
Genetic Susceptibility to Arsenic-induced Skin CancerR01CA102484 · NCI · UNIVERSITY OF CHICAGO · PI AHSAN, HABIBUL · 2004 to 2008
$2.0M
A Study of Telomeres in an Arsenic-Exposed Bangladesh CohortR01ES020506 · NIEHS · UNIVERSITY OF CHICAGO · PI PIERCE, BRANDON LEE · 2011 to 2015
$1.9M
NCI NIH HHS P30 CA014599NCI NIH HHS R01 CA102484NCI NIH HHS R01 CA107431NIEHS NIH HHS P30 ES027792NIEHS NIH HHS P42 ES010349NIEHS NIH HHS R01 ES020506NIEHS NIH HHS R35 ES028379
6 · The paper itself

Abstract

backgroundArsenic exposure increases the risk of several cancers in humans and contributes to genomic instability. Somatic loss of the Y chromosome (LoY) is a potential biomarker of genomic instability and cancer risk. Smoking is associated with LoY, but few other carcinogens have been investigated. We tested the cross-sectional association between arsenic exposure and LoY in leukocytes among genotyped Bangladeshi men (age 20-70 years) from the Health Effects of Arsenic Longitudinal Study.

methodsWe extracted the median of logR-ratios from probes on the Y chromosome (mLRR-chrY) from genotyping arrays (n = 1364) and estimated the percentage of cells with LoY (% LoY) from mLRR-chrY. We evaluated the association between arsenic exposure (measured in drinking water and urine) and LoY using multivariable linear and logistic regression models. The association between LoY and incident arsenic-induced skin lesions was also examined.

resultsTen percent of genotyped men had LoY in at least 5% of cells and % LoY increased with age. Among men randomly selected for genotyping (n = 778), higher arsenic in drinking water, arsenic consumed and urinary arsenic were associated with increased % LoY (P = 0.006, P = 0.06 and P = 0.13, respectively). LoY was associated with increased risk of incident skin lesions (P = 0.008).

conclusionArsenic exposure was associated with increased LoY, providing additional evidence that arsenic contributes to genomic instability. LoY was associated with developing skin lesions, a risk factor for cancer, suggesting that LoY may be a biomarker of susceptibility in arsenic-exposed populations. The effect of arsenic on somatic events should be further explored in cancer-prone tissue types.

Indexed as

ArsenicDrinking WaterNeoplasmsAdultAgedChromosomes, Human, YCross-Sectional StudiesGenomic InstabilityHumansLongitudinal StudiesMaleMiddle AgedRisk FactorsYoung AdultArsenicDrinking WaterArseniccopy number variationskin lesionsY chromosome loss

Identifiers

PMID36130227
PMCPMC10695470
OpenAlexW4296580691

What Socratic holds

Textmetadata
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.