Evidence map›Paper›PMID 36155915›Full record

ArticleDevelopment, growth & differentiation2022

Gene activation of metazoan Fox transcription factors at the onset of metamorphosis in the marine demosponge Amphimedon queenslandica.

Huifang Yuan, William L Hatleberg, Bernard M Degnan, Sandie M Degnan

Open access · greenAbstract read
In one paragraph

Article in Development, growth & differentiation, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 33% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Huifang YuanSchool of Biological Sciences and Centre for Marine Science, University of Queensland, Brisbane, Queensland, Australia.ORCID https://orcid.org/0000-0002-0550-5599
William L HatlebergSchool of Biological Sciences and Centre for Marine Science, University of Queensland, Brisbane, Queensland, Australia.ORCID https://orcid.org/0000-0002-0423-7123
Bernard M DegnanSchool of Biological Sciences and Centre for Marine Science, University of Queensland, Brisbane, Queensland, Australia.ORCID https://orcid.org/0000-0001-7573-8518
Sandie M DegnanSchool of Biological Sciences and Centre for Marine Science, University of Queensland, Brisbane, Queensland, Australia.ORCID https://orcid.org/0000-0001-8003-0426
Queensland University of Technology · AU

Funding

Australian Research Council DP190102521
6 · The paper itself

Abstract

Transcription factors encoded by the Forkhead (Fox) gene family have diverse, sometimes conserved, regulatory roles in eumetazoan development, immunity, and physiology. Although this gene family includes members that predate the origin of the animal kingdom, the majority of metazoan Fox genes evolved after the divergence of animals and choanoflagellates. Here, we characterize the composition, structure, and expression of Fox genes in the marine demosponge Amphimedon queenslandica to better understand the origin and evolution of this family. The Fox gene repertoire in A. queenslandica appears to be similar to the ancestral metazoan Fox gene family. All 17 A. queenslandica Fox genes are differentially expressed during development and in adult cell types. Remarkably, eight of these, all of which appear to be metazoan-specific, are induced within just 1 h of larval settlement and commencement of metamorphosis. Gene co-expression analyses suggest that these eight Fox genes regulate developmental and physiological processes similar to their roles in other animals. These findings are consistent with Fox genes playing deeply ancestral roles in animal development and physiology, including in response to changes in the external environment.

Indexed as

Forkhead Transcription FactorsPoriferaAnimalsMetamorphosis, BiologicalPhylogenyProtein Structure, TertiaryTranscriptional ActivationForkhead Transcription Factorsbiphasic life cyclegene regulationlarval settlementpelagobenthic life cyclePorifera

Identifiers

PMID36155915
PMCPMC9828451
OpenAlexW4297236022

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.