Evidence map›Paper›PMID 36160010›Full record

ArticleFrontiers in genetics2022

Transcriptomic profiles of poplar (

Yue Yu, Nan Meng, Song Chen, Hongjiao Zhang, Zhijie Liu, Yiran Wang, Yanan Jing, Yuting Wang, Su Chen

Abstract read
In one paragraph

Article in Frontiers in genetics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. PlantForestry research · 2023
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yue YuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Nan MengState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Song ChenState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Hongjiao ZhangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Zhijie LiuState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Yiran WangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Yanan JingState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Yuting WangState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.
Su ChenState Key Laboratory of Tree Genetics and Breeding, Northeast Forestry University, Harbin, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The formation of adventitious roots (ARs) is vital for the vegetative propagation of poplars. However, the relevant mechanisms remain unclear. To reveal the underlying molecular mechanism, we used RNA-seq to investigate the transcriptional alterations of poplar cuttings soaked in water for 0, 2, 4, 6, 8, and 10 d; 3,798 genes were differentially expressed at all the time points, including 2,448 upregulated and 1,350 downregulated genes. Biological processes including "cell cycle," "photosynthesis," "regulation of hormone levels," and "auxin transport" were enriched in the differentially expressed genes (DEGs). KEGG results showed that the common DEGs were most enriched in the pathway of "Carbon fixation in photosynthetic organisms" and "Starch and sucrose metabolism." We further dissected 38 DEGs related to root and auxin, including two

Indexed as

adventitious rootdifferentially expressed genesleafy cuttingspoplartranscriptome analysis

Identifiers

PMID36160010
PMCPMC9493132

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.