Evidence map›Paper›PMID 36166305›Full record

ArticleJCI insight2022

Immunogenetics associated with severe coccidioidomycosis.

Amy P Hsu, Agnieszka Korzeniowska, Cynthia C Aguilar, Jingwen Gu, Eric Karlins, Andrew J Oler, Gang Chen, Glennys V Reynoso, Joie Davis, Alexandria Chaput and 30 more

Open access · goldAbstract read
In one paragraph

Article in JCI insight, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 40 papers.

0numbers the graph read from it
0cells of the map it votes in
40citing papers in PubMed
6.9field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

40 citing papers in PubMed, 49 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Exhausted T cell phenotypes in disseminated coccidioidomycosis.medRxiv : the preprint server for health sciences · 2026
    Article
  9. Review
  10. Urban soils along the Kern River and Los Gatos Creek are hotspots forbioRxiv : the preprint server for biology · 2026
    Article
  11. Review
  12. Type-2 immune skewing in patients with disseminated coccidioidomycosis.medRxiv : the preprint server for health sciences · 2025
    Article
  13. Article
  14. Article
  15. Article
  16. Article
  17. Human immunity to fungal infections.The Journal of experimental medicine · 2025
    Review
  18. Article
  19. Article
  20. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

40 authors at 10 institutions in 5 countries.

Amy P HsuLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Agnieszka KorzeniowskaLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Cynthia C AguilarLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Jingwen GuBioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, NIAID, NIH, Bethesda, Maryland, USA.
Eric KarlinsBioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, NIAID, NIH, Bethesda, Maryland, USA.
Andrew J OlerBioinformatics and Computational Biosciences Branch, Office of Cyber Infrastructure and Computational Biology, NIAID, NIH, Bethesda, Maryland, USA.
Gang ChenMarsico Lung Institute and Cystic Fibrosis Research Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Glennys V ReynosoLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Joie DavisLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Alexandria ChaputValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Tao PengValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Ling SunMarsico Lung Institute and Cystic Fibrosis Research Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Justin B LackNIAID Collaborative Bioinformatics Resource, NIAID, NIH, Bethesda, Maryland, USA.
Derek J BaysDepartment of Internal Medicine, Division of Infectious Diseases, UC Davis Health, Sacramento, California, USA.
Ethan R StewartDepartment of Internal Medicine, Division of Infectious Diseases, UC Davis Health, Sacramento, California, USA.
Sarah E WaldmanDepartment of Internal Medicine, Division of Infectious Diseases, UC Davis Health, Sacramento, California, USA.
Daniel A PowellValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Fariba M DonovanValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Jigar V DesaiLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Nima PouladiCenter for Biomedical Informatics and Biostatistics and.
Debra A Long PrielNeutrophil Monitoring Laboratory, Applied/Developmental Research Directorate, Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Daisuke YamanakaLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Sergio D RosenzweigImmunology Service, Department of Laboratory Medicine, Clinical Center and.
Julie E NiemelaImmunology Service, Department of Laboratory Medicine, Clinical Center and.
Jennifer StoddardImmunology Service, Department of Laboratory Medicine, Clinical Center and.
Alexandra F FreemanLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Christa S ZerbeLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Douglas B KuhnsNeutrophil Monitoring Laboratory, Applied/Developmental Research Directorate, Leidos Biomedical Research, Inc, Frederick National Laboratory for Cancer Research, Frederick, Maryland, USA.
Yves A LussierCenter for Biomedical Informatics and Biostatistics and.
Kenneth N OlivierLaboratory of Chronic Airway Infection, Pulmonary Branch, National Heart, Lung, and Blood Institute, NIH, Bethesda, Maryland, USA.
Richard C BoucherMarsico Lung Institute and Cystic Fibrosis Research Center, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA.
Heather D HickmanLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Jeffrey FrelingerValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Joshua FiererVA HealthCare San Diego, San Diego, California, USA.
Lisa F ShubitzValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Thomas L LetoLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
George R ThompsonDepartment of Internal Medicine, Division of Infectious Diseases, UC Davis Health, Sacramento, California, USA.
John N GalgianiValley Fever Center for Excellence, University of Arizona College of Medicine-Tucson, Tucson, Arizona, USA.
Michail S LionakisLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
Steven M HollandLaboratory of Clinical Immunology and Microbiology, National Institute of Allergy and Infectious Diseases (NIAID), NIH, Bethesda, Maryland, USA.
National Institute of Allergy and Infectious Diseases · USUniversity of Arizona · USLeidos (United States) · USNaval Research Laboratory Information Technology DivisionUniversity of California, Davis · USUniversity of North Carolina at Chapel Hill · USNational Heart Lung and Blood Institute · USTokyo University of Pharmacy and Life Sciences · JPUniversity of California Davis Medical Center · USUniversity of California San Diego · US

Funding

WORK ORDER 126643 B539 EXPAND IC SUITE75N91019D00024 · NIAID · LEIDOS BIOMEDICAL RESEARCH, INC. · PI BRISCOE, LYNN · 2019 to 2025
$3932.6M
An Avirulent Arthroconidial Vaccine Candidate to Prevent Human CoccidioidomycosisR01AI132140 · NIAID · UNIVERSITY OF ARIZONA · PI GALGIANI, JOHN N · 2017 to 2020
$4.8M
The molecular and cellular mechanisms of the STAT3 mutation-mediated pulmonary disorder in Autosomal Dominant Hyper IgE Syndrome (AD-HIES)U01HL156655 · NHLBI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BOUCHER, RICHARD CHARLES, CHEN, GANG · 2022 to 2025
$3.0M
Immuno-Genetic Basis for Human Disseminated CoccidioidomycosisU01AI122275 · NIAID · UNIVERSITY OF ARIZONA · PI GALGIANI, JOHN N, HOLLAND, STEVEN M · 2017 to 2020
$2.3M
Elucidating the roles of systemic and mucosal complement in protection against invasive fungal infections impacting hematopoietic cell transplantR00AI141622 · NIAID · HACKENSACK UNIVERSITY MEDICAL CENTER · PI DESAI, JIGARKUMAR V · 2022 to 2023
$498k
Systems-level genetic patterns underlying disseminated coccidioidomycosis in humansR21AI152394 · NIAID · UNIVERSITY OF UTAH · PI LUSSIER, YVES A · 2020 to 2021
$448k
NCI NIH HHS 75N91019D00024NHLBI NIH HHS U01 HL156655NIAID NIH HHS R00 AI141622NIAID NIH HHS R01 AI132140NIAID NIH HHS R21 AI152394NIAID NIH HHS U01 AI122275
6 · The paper itself

Abstract

Disseminated coccidioidomycosis (DCM) is caused by Coccidioides, pathogenic fungi endemic to the southwestern United States and Mexico. Illness occurs in approximately 30% of those infected, less than 1% of whom develop disseminated disease. To address why some individuals allow dissemination, we enrolled patients with DCM and performed whole-exome sequencing. In an exploratory set of 67 patients with DCM, 2 had haploinsufficient STAT3 mutations, and defects in β-glucan sensing and response were seen in 34 of 67 cases. Damaging CLEC7A and PLCG2 variants were associated with impaired production of β-glucan-stimulated TNF-α from PBMCs compared with healthy controls. Using ancestry-matched controls, damaging CLEC7A and PLCG2 variants were overrepresented in DCM, including CLEC7A Y238* and PLCG2 R268W. A validation cohort of 111 patients with DCM confirmed the PLCG2 R268W, CLEC7A I223S, and CLEC7A Y238* variants. Stimulation with a DECTIN-1 agonist induced DUOX1/DUOXA1-derived hydrogen peroxide [H2O2] in transfected cells. Heterozygous DUOX1 or DUOXA1 variants that impaired H2O2 production were overrepresented in discovery and validation cohorts. Patients with DCM have impaired β-glucan sensing or response affecting TNF-α and H2O2 production. Impaired Coccidioides recognition and decreased cellular response are associated with disseminated coccidioidomycosis.

Indexed as

beta-GlucansCoccidioidomycosisCoccidioidesHumansHydrogen PeroxideTumor Necrosis Factor-alphabeta-GlucansHydrogen PeroxideTumor Necrosis Factor-alphaFungal infectionsGeneticsInfectious diseaseInnate immunityPopulation genetics

Identifiers

PMID36166305
PMCPMC9746810
OpenAlexW4297259965

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.