Evidence map›Paper›PMID 36178196›Full record

ArticleeLife2022

Airway basal cells show regionally distinct potential to undergo metaplastic differentiation.

Yizhuo Zhou, Ying Yang, Lihao Guo, Jun Qian, Jian Ge, Debora Sinner, Hongxu Ding, Andrea Califano, Wellington V Cardoso

Open access · goldAbstract read
In one paragraph

Article in eLife, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 37 papers.

0numbers the graph read from it
0cells of the map it votes in
37citing papers in PubMed
7.3field-weighted citation impact, top 2% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

37 citing papers in PubMed, 52 citations in OpenAlex.

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  6. Cellular plasticity and regenerative mechanisms in the lung.European respiratory review : an official journal of the European Respiratory Society · 2026
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 2 countries.

Yizhuo Zhou *Columbia Center for Human Development, Columbia University Irving Medical Center, New York, United States.
Ying Yang *Columbia Center for Human Development, Columbia University Irving Medical Center, New York, United States.ORCID 0000-0002-4197-6216
Lihao Guo *Department of Pharmacy Practice and Science, College of Pharmacy, University of Arizona, Tucson, United States.
Jun QianColumbia Center for Human Development, Columbia University Irving Medical Center, New York, United States.
Jian GeColumbia Center for Human Development, Columbia University Irving Medical Center, New York, United States.
Debora SinnerNeonatology and Pulmonary Biology Perinatal Institute, Cincinnati Children's Hospital Medical Center and University of Cincinnati, College of Medicine, Cincinnati, United States.ORCID 0000-0002-0704-5223
Hongxu DingDepartment of Pharmacy Practice and Science, College of Pharmacy, University of Arizona, Tucson, United States.ORCID 0000-0002-7846-9744
Andrea CalifanoDepartments of Systems Biology, Biochemistry & Molecular Biophysics, Biomedical Informatics, Medicine; JP Sulzberger Columbia Genome Center; Herbert Irving Comprehensive Cancer Center, Columbia University Irving Medical Center, New York, United States.ORCID 0000-0003-4742-3679
Wellington V CardosoColumbia Center for Human Development, Columbia University Irving Medical Center, New York, United States.ORCID 0000-0002-8868-9716
Columbia University · USUniversity of Arizona · USCincinnati Children's Hospital Medical Center · USColumbia University Irving Medical Center · US

Funding

Tumor Biology and Microenvironment ProgramP30CA013696 · NCI · COLUMBIA UNIV NEW YORK MORNINGSIDE · PI Anil K Rustgi · 1985 to 2026
$115.3M
Clinical and Translational Science AwardUL1TR001873 · NCATS · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI REILLY, MUREDACH P · 2016 to 2025
$99.0M
Predicting Cancer Cell Response to Endogenous and Exogenous Perturbations at the Single Cell LevelR35CA197745 · NCI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI ANDREA CALIFANO · 2015 to 2026
$11.5M
Mechanisms Controlling Expansion and Lineage Specification of Airway Progenitors in Development and DiseaseR35HL135834 · NHLBI · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CARDOSO, WELLINGTON V. · 2017 to 2023
$6.7M
Molecular mechanisms underlying trachea formation and the pathology of tracheomalacia and complete tracheal ringsR01HL144774 · NHLBI · CINCINNATI CHILDRENS HOSP MED CTR · PI SINNER, DEBORA · 2019 to 2023
$2.2M
High-performance compute cluster for biomedical computingS10OD012351 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2012 to 2012
$2.0M
IMPACT OF PRENATAL VITAMIN A DEFICIENCY ON CELL FATE ALTERATIONS IN ADULT AIRWAY HYPERRESPONSIVENESSR01HL145302 · NHLBI · TEXAS A&M AGRILIFE RESEARCH · PI SUZUKI, MASAKO · 2020 to 2023
$1.6M
BD Biosciences InfluxS10OD020056 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI SNOECK, HANS-WILLEM E · 2015 to 2015
$600k
Storage System for High Performance ComputingS10OD021764 · OD · COLUMBIA UNIVERSITY HEALTH SCIENCES · PI CALIFANO, ANDREA · 2016 to 2016
$600k
NCATS NIH HHS UL1 TR001873NCI NIH HHS P30 CA013696NCI NIH HHS R35 CA197745NHLBI NIH HHS R01 HL144774NHLBI NIH HHS R01 HL145302NHLBI NIH HHS R35 HL135834NIH HHS R35 CA197745NIH HHS S10 OD012351NIH HHS S10 OD020056NIH HHS S10 OD021764
6 · The paper itself

Abstract

Basal cells are multipotent stem cells of a variety of organs, including the respiratory tract, where they are major components of the airway epithelium. However, it remains unclear how diverse basal cells are and how distinct subpopulations respond to airway challenges. Using single cell RNA-sequencing and functional approaches, we report a significant and previously underappreciated degree of heterogeneity in the basal cell pool, leading to identification of six subpopulations in the adult murine trachea. Among these, we found two major subpopulations, collectively comprising the most uncommitted of all the pools, but with distinct gene expression signatures. Notably, these occupy distinct ventral and dorsal tracheal niches and differ in their ability to self-renew and initiate a program of differentiation in response to environmental perturbations in primary cultures and in mouse injury models in vivo. We found that such heterogeneity is acquired prenatally, when the basal cell pool and local niches are still being established, and depends on the integrity of these niches, as supported by the altered basal cell phenotype of tracheal cartilage-deficient mouse mutants. Finally, we show that features that distinguish these progenitor subpopulations in murine airways are conserved in humans. Together, the data provide novel insights into the origin and impact of basal cell heterogeneity on the establishment of regionally distinct responses of the airway epithelium during injury-repair and in disease conditions.

Indexed as

Epithelial CellsRespiratory MucosaAdultAnimalsCell DifferentiationHumansMiceRNATracheaRNAairway epitheliumbasal cell heterogeneitydevelopmental biologyhumanlung repairmouseorganotypic culturesregenerative medicinestem cellstem cells

Identifiers

PMID36178196
PMCPMC9578702
OpenAlexW4298087944

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.