Evidence map›Paper›PMID 36182916›Full record

ArticleBMC genomics2022

Leveraging family history in genetic association analyses of binary traits.

Yixin Zhang, James B Meigs, Ching-Ti Liu, Josée Dupuis, Chloé Sarnowski

Open access · goldAbstract read
In one paragraph

Article in BMC genomics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
0.6field-weighted citation impact, top 28% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed, 3 citations in OpenAlex.

  1. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 3 institutions in 2 countries.

Yixin ZhangDepartment of Biostatistics, Boston University School of Public Health, Boston, MA, USA. zhangyix@bu.edu.
James B MeigsDivision of General Internal Medicine, Massachusetts General Hospital, Boston, MA, USA.
Ching-Ti LiuDepartment of Biostatistics, Boston University School of Public Health, Boston, MA, USA.
Josée DupuisDepartment of Biostatistics, Boston University School of Public Health, Boston, MA, USA.
Chloé SarnowskiDepartment of Epidemiology, Human Genetics, and Environmental Sciences, The University of Texas Health Science Center, School of Public Health, Houston, TX, USA.
Boston University · USHarvard University · USThe University of Texas Health Science Center at Houston · US

Funding

TOPMed Omics of Type 2 Diabetes and Quantitative TraitsUM1DK078616 · NIDDK · MASSACHUSETTS GENERAL HOSPITAL · PI MANNING, ALISA KNODLE · 2021 to 2025
$3.8M
Exploring Common Biological Pathways Underlying Insulin Resistance and Alzheimer Disease using Genetic and Omic ToolsR00AG066849 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SARNOWSKI, CHLOÉ · 2022 to 2024
$726k
Exploring Common Biological Pathways Underlying Insulin Resistance and Alzheimer Disease using Genetic and Omic ToolsK99AG066849 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI SARNOWSKI, CHLOÉ · 2021 to 2022
$179k
NIA NIH HHS K99 AG066849NIA NIH HHS R00 AG066849NIDDK NIH HHS UM1 DK078616NIH HHS NIA K99AG066849NIH HHS NIDDK UM1DK078616
6 · The paper itself

Abstract

backgroundConsidering relatives' health history in logistic regression for case-control genome-wide association studies (CC-GWAS) may provide new information that increases accuracy and power to detect disease associated genetic variants. We conducted simulations and analyzed type 2 diabetes (T2D) data from the Framingham Heart Study (FHS) to compare two methods, liability threshold model conditional on both case-control status and family history (LT-FH) and Fam-meta, which incorporate family history into CC-GWAS.

resultsIn our simulation scenario of trait with modest T2D heritability (h

conclusionsOverall, LT-FH and Fam-meta had higher power than CC-GWAS in simulations, especially using phenotypes that were more prevalent in older age groups, and both methods detected known genetic variants with lower P-values in real data application, highlighting the benefits of including family history in genetic association studies.

Indexed as

Diabetes Mellitus, Type 2Genome-Wide Association StudyGenetic Association StudiesHumansPhenotypePolymorphism, Single NucleotideFamily historyGWASMeta-analysis

Identifiers

PMID36182916
PMCPMC9526325
OpenAlexW4298395609

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.