Evidence map›Paper›PMID 36195585›Full record

ArticleCell death & disease2022

Single-cell sequencing resolves the landscape of immune cells and regulatory mechanisms in HIV-infected immune non-responders.

Haiyu Li, Yongyao Tang, Yujing Wang, Yue Li, Yi Yang, Kui Liao, Fangzhou Song, Shixiong Deng, Yaokai Chen

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Cell death & disease, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 15 papers.

0numbers the graph read from it
0cells of the map it votes in
15citing papers in PubMed
1.6field-weighted citation impact, top 14% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

15 citing papers in PubMed, 25 citations in OpenAlex.

  1. Article
  2. Article
  3. Review
  4. Persistent CD8Frontiers in immunology · 2026
    Article
  5. Review
  6. Article
  7. Article
  8. Article
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  10. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 1 country.

Haiyu LiDepartment of Infectious Disease, Chongqing Public Health Medical Center, 400036, Chongqing, China.
Yongyao TangSchool of Medical Information, Chongqing Medical University, 400016, Chongqing, China.
Yujing WangSchool of Medical Information, Chongqing Medical University, 400016, Chongqing, China.
Yue LiBasic Medical College, Chongqing Medical University, 400016, Chongqing, China.
Yi YangThe First Clinical College of Chongqing Medical University, Chongqing Medical University, 400016, Chongqing, China.
Kui LiaoDepartment of radiotherapy, The First Affiliated Hospital of Chongqing Medical University, 400016, Chongqing, China. klcqmu@163.com.
Fangzhou SongBasic Medical College, Chongqing Medical University, 400016, Chongqing, China. fzsongcq@163.com.
Shixiong DengBasic Medical College, Chongqing Medical University, 400016, Chongqing, China. dengshixiong1963@163.com.
Yaokai ChenDepartment of Infectious Disease, Chongqing Public Health Medical Center, 400036, Chongqing, China. ykchencmc@163.com.ORCID http://orcid.org/0000-0003-3403-9782
Chongqing Medical University · CNChongqing Institute of Green and Intelligent Technology · CNChongqing Public Health Medical Center · CNThe Affiliated Yongchuan Hospital of Chongqing Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Immune non-responder after highly active antiretroviral therapy (HAART) is the main cause of opportunistic infections and high mortality in AIDS patients, but the mechanism underlying immune reconstitution failure is poorly understood. Here, we performed scRNA-seq, and scATAC-seq analysis of peripheral blood mononuclear cells (PBMCs) derived from immune non-responder (INR) and responder (IR) HIV-1-infected subjects. We found low expression of mucosal-associated invariant T (MAIT) cells in INRs, which exhibited transcriptional profiles associated with impaired mitochondrial function and apoptosis signaling. Single-cell assays for transposase-accessible chromatin (scATAC-seq) and flow cytometry revealed diminished mitochondrial fitness in MAIT cells from INRs, and MAIT had low expression of transcription factor A for mitochondria (TFAM) and peroxisomal proliferator-activated receptor alpha (PPARA). These findings demonstrate that restoring mitochondrial function could modulate the immune dysfunction characteristic of MAIT against bacterial co-infections in INRs subjects.

Indexed as

HIV InfectionsChromatinHumansLeukocytes, MononuclearTranscription FactorsTransposasesChromatinTranscription FactorsTransposases

Identifiers

PMID36195585
PMCPMC9532384
OpenAlexW4300979700

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.