Evidence map›Paper›PMID 36202216›Full record

ArticleArchives of biochemistry and biophysics2022

SEPHS1: Its evolution, function and roles in development and diseases.

Jeyoung Bang, Donghyun Kang, Jisu Jung, Tack-Jin Yoo, Myoung Sup Shim, Vadim N Gladyshev, Petra A Tsuji, Dolph L Hatfield, Jin-Hong Kim, Byeong Jae Lee

Open access · greenAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.4field-weighted citation impact, top 21% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Review
  5. Microorganisms · 2025
    Article
  6. Article
  7. Selenoproteins in Health.Molecules (Basel, Switzerland) · 2023
    Review
  8. Biological and Catalytic Properties of Selenoproteins.International journal of molecular sciences · 2023
    Review
  9. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 5 institutions in 3 countries.

Jeyoung BangInterdisciplinary Program in Bioinformatics, College of Natural Sciences, Seoul National University, Seoul, South Korea.
Donghyun KangSchool of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, South Korea.
Jisu JungSchool of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, South Korea.
Tack-Jin YooSchool of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, South Korea.
Myoung Sup ShimDepartment of Ophthalmology, Duke Eye Center, Duke University, Durham, NC, USA.
Vadim N GladyshevDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Petra A TsujiDepartment of Biological Sciences, Towson University, 8000 York Rd., Towson, MD, USA.
Dolph L HatfieldMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD, USA.
Jin-Hong KimSchool of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, South Korea. Electronic address: jinhkim@snu.ac.kr.
Byeong Jae LeeInterdisciplinary Program in Bioinformatics, College of Natural Sciences, Seoul National University, Seoul, South Korea; School of Biological Sciences, College of Natural Sciences, Seoul National University, Seoul, South Korea. Electronic address: imbglmg@snu.ac.kr.
Seoul National University · KRBrigham and Women's Hospital · USDuke University · USNational Institutes of Health · USTowson University · US

Funding

Systems level understanding of selenoprotein biosynthesisR01DK117149 · NIDDK · BRIGHAM AND WOMEN'S HOSPITAL · PI GLADYSHEV, VADIM N. · 2018 to 2022
$2.4M
NIDDK NIH HHS R01 DK117149
6 · The paper itself

Abstract

Selenophosphate synthetase (SEPHS) was originally discovered in prokaryotes as an enzyme that catalyzes selenophosphate synthesis using inorganic selenium and ATP as substrates. However, in contrast to prokaryotes, two paralogs, SEPHS1 and SEPHS2, occur in many eukaryotes. Prokaryotic SEPHS, also known as SelD, contains either cysteine (Cys) or selenocysteine (Sec) in the catalytic domain. In eukaryotes, only SEPHS2 carries out selenophosphate synthesis and contains Sec at the active site. However, SEPHS1 contains amino acids other than Sec or Cys at the catalytic position. Phylogenetic analysis of SEPHSs reveals that the ancestral SEPHS contains both selenophosphate synthesis and another unknown activity, and that SEPHS1 lost the selenophosphate synthesis activity. The three-dimensional structure of SEPHS1 suggests that its homodimer is unable to form selenophosphate, but retains ATPase activity to produce ADP and inorganic phosphate. The most prominent function of SEPHS1 is that it is implicated in the regulation of cellular redox homeostasis. Deficiency of SEPHS1 leads to the disturbance in the expression of genes involved in redox homeostasis. Different types of reactive oxygen species (ROS) are accumulated in response to SEPHS deficiency depending on cell or tissue types. The accumulation of ROS causes pleiotropic effects such as growth retardation, apoptosis, DNA damage, and embryonic lethality. SEPHS1 deficiency in mouse embryos affects retinoic signaling and other related signaling pathways depending on the embryonal stage until the embryo dies at E11.5. Dysregulated SEPHS1 is associated with the pathogenesis of various diseases including cancer, Crohn's disease, and osteoarthritis.

Indexed as

SeleniumSelenocysteineAdenosine DiphosphateAdenosine TriphosphatasesAdenosine TriphosphateAnimalsCysteineMicePhosphatesPhosphotransferasesPhylogenyReactive Oxygen SpeciesSelenium CompoundsAdenosine DiphosphateAdenosine TriphosphatasesAdenosine TriphosphateCysteinePhosphatesPhosphotransferasesReactive Oxygen SpeciesSeleniumSelenium CompoundsSelenocysteineselenophosphateSephs1 protein, mouseCell deathDevelopmentOsteoarthritisReactive oxygen speciesSeleniumSelenophosphate synthetase

Identifiers

PMID36202216
PMCPMC9648052
OpenAlexW4300717350

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.