Evidence map›Paper›PMID 36239304›Full record

ArticleJournal of chemical information and modeling2022

Discovery of New Zika Protease and Polymerase Inhibitors through the Open Science Collaboration Project OpenZika.

Melina Mottin, Bruna Katiele de Paula Sousa, Nathalya Cristina de Moraes Roso Mesquita, Ketllyn Irene Zagato de Oliveira, Gabriela Dias Noske, Geraldo Rodrigues Sartori, Aline de Oliveira Albuquerque, Fabio Urbina, Ana C Puhl, José Teófilo Moreira-Filho and 11 more

Open access · greenAbstract read
In one paragraph

Article in Journal of chemical information and modeling, 2022. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
2.6field-weighted citation impact, top 10% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 15 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

21 authors at 8 institutions in 2 countries.

Melina MottinLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO74605-170, Brazil.
Bruna Katiele de Paula SousaLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO74605-170, Brazil.
Nathalya Cristina de Moraes Roso MesquitaSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.
Ketllyn Irene Zagato de OliveiraSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.
Gabriela Dias NoskeSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.
Geraldo Rodrigues SartoriFundação Oswaldo Cruz, Ceará61773-270, Brazil.ORCID 0000-0001-5613-7194
Aline de Oliveira AlbuquerqueFundação Oswaldo Cruz, Ceará61773-270, Brazil.
Fabio UrbinaCollaborations Pharmaceuticals, Inc., Raleigh, North Carolina27606, United States.
Ana C PuhlCollaborations Pharmaceuticals, Inc., Raleigh, North Carolina27606, United States.ORCID 0000-0002-1456-8882
José Teófilo Moreira-FilhoLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO74605-170, Brazil.
Guilherme E SouzaSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.ORCID 0000-0003-3278-6688
Rafael V C GuidoSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.
Eugene MuratovUniversity of North Carolina at Chapel Hill, Chapel Hill, North Carolina27599, United States.ORCID 0000-0003-4616-7036
Bruno Junior NevesLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO74605-170, Brazil.ORCID 0000-0002-1309-8743
João Hermínio Martins da SilvaFundação Oswaldo Cruz, Ceará61773-270, Brazil.ORCID 0000-0003-1534-9857
Alex E ClarkSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California92093, United States.
Jair L Siqueira-NetoSkaggs School of Pharmacy and Pharmaceutical Sciences, University of California San Diego, La Jolla, California92093, United States.
Alexander L PerrymanDepartment of Pharmacology, Physiology and Neuroscience, Rutgers University-New Jersey Medical School, Newark, New Jersey07103, United States.
Glaucius OlivaSão Carlos Institute of Physics, University of São Paulo, Avenida João Dagnone, 1100, São Carlos, São Paulo13563-120, Brazil.
Sean EkinsCollaborations Pharmaceuticals, Inc., Raleigh, North Carolina27606, United States.ORCID 0000-0002-5691-5790
Carolina Horta AndradeLaboratory of Molecular Modeling and Drug Design (LabMol), Faculdade de Farmácia, Universidade Federal de Goiás, Goiânia, GO74605-170, Brazil.ORCID 0000-0003-0101-1492
Universidade de São Paulo · BRUniversidade Federal de Goiás · BRCollaborations Pharmaceuticals (United States) · USFundação Oswaldo Cruz · BRUniversity of California San Diego · USRutgers, The State University of New Jersey · USUniversidade de Brasília · BRUniversity of North Carolina at Chapel Hill · US

Funding

Research Project 1: Coronavirus antiviral lead development and combination testingU19AI171292 · NIAID · UNIV OF NORTH CAROLINA CHAPEL HILL · PI BARIC, RALPH S · 2022 to 2022
$65.5M
Centralized assay datasets for modelling support of small drug discovery organizationsR44GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2018 to 2022
$3.3M
Centralized assay datasets for modelling support of small drug discovery organizationsR43GM122196 · NIGMS · COLLABORATIONS PHARMACEUTICALS, INC. · PI EKINS, SEAN · 2017 to 2017
$150k
NIAID NIH HHS U19 AI171292NIGMS NIH HHS R43 GM122196NIGMS NIH HHS R44 GM122196
6 · The paper itself

Abstract

The Zika virus (ZIKV) is a neurotropic arbovirus considered a global threat to public health. Although there have been several efforts in drug discovery projects for ZIKV in recent years, there are still no antiviral drugs approved to date. Here, we describe the results of a global collaborative crowdsourced open science project, the OpenZika project, from IBM's World Community Grid (WCG), which integrates different computational and experimental strategies for advancing a drug candidate for ZIKV. Initially, molecular docking protocols were developed to identify potential inhibitors of ZIKV NS5 RNA-dependent RNA polymerase (NS5 RdRp), NS3 protease (NS2B-NS3pro), and NS3 helicase (NS3hel). Then, a machine learning (ML) model was built to distinguish active vs inactive compounds for the cytoprotective effect against ZIKV infection. We performed three independent target-based virtual screening campaigns (NS5 RdRp, NS2B-NS3pro, and NS3hel), followed by predictions by the ML model and other filters, and prioritized a total of 61 compounds for further testing in enzymatic and phenotypic assays. This yielded five non-nucleoside compounds which showed inhibitory activity against ZIKV NS5 RdRp in enzymatic assays (IC

Indexed as

Antiviral AgentsProtease InhibitorsZika VirusHumansMolecular Docking SimulationPeptide HydrolasesRNA-Dependent RNA PolymeraseViral Nonstructural ProteinsZika Virus InfectionAntiviral AgentsPeptide HydrolasesProtease InhibitorsRNA-Dependent RNA PolymeraseViral Nonstructural Proteins

Identifiers

PMID36239304
PMCPMC9923514
OpenAlexW4306168627

What Socratic holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.